<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15878

Description Multifunctional fusion protein
SequenceMVMGNPPLAFEFELAQVSVNHRDCDDASIATSMIMAGVPLTEPYLWCYLSSLAKEERNGLESGRLPISDTFYLMGTSRLTDTLNPQEVFVVLEHGQIYGEVLAYRNPGLQFGDIHRLLAVPVKNLGDIIGNAKYEKSDASELPQEYLGILLHEQPNKYYMVIRGQRLIMEAESSMQTIMEKLQSHQLRVGFKFEGFQYQLGEFRLRVGKVVPFGSESLRGIVMEMEYLPISSVEISQLIMSELFDIWKEALEKRSLPGHFVRVEPKFSEYGLSDQYTSQHTAVQYADSLAHMIKLRDSLSLNLLERIELRFVVHIGGLSETASLLLPSRGSIGNNLATSFESAPSSTSSASRARMLVMHLQLLDSEKTVA
Length370
PositionHead
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.08
Grand average of hydropathy-0.089
Instability index46.39
Isoelectric point5.37
Molecular weight41562.22
Publications
PubMed=29089032

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). 
ECO:0000256	RuleBase:RU364152
ECO:0000256	RuleBase:RU363098
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
nuclear RNA-directed RNA polymerase complex	GO:0031380	IBA:GO_Central
GO - Biological Function
RNA binding	GO:0003723	IEA:UniProtKB-KW
RNA-directed 5'-3' RNA polymerase activity	GO:0003968	IBA:GO_Central
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
production of siRNA involved in chromatin silencing by small RNA	GO:0070919	IBA:GO_Central
production of siRNA involved in RNA interference	GO:0030422	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP15878
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.66|      14|      15|     182|     196|       1
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  182-  196 (21.92/16.12)	LQSHQLRVGfKFEGF
  200-  213 (25.74/13.90)	LGEFRLRVG.KVVPF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15878 with Med20 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA