<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15876

Description Mediator of RNA polymerase II transcription subunit 19a
SequenceMPEKENTEVENDELPVTNAEVYQDMSLESKSIVNDIVDILIQLHTDDVESITIDANIIELEAQTEYKVEVDYSGEDFDQENDTMNEYINDHKENEELDVLSQIEGIDLDLYKDSVSKSFRADEIAQGYLMDCIKVFPDEYHSSIRAKRIYRYCGFYFSFQVIAYHDFFCKKPLSLSIFDTHYLHNMVGDTEIRKGKGMQLDQLIQHASSLKETNLHIQPFDLDALREAFRLRESKKEIHIVAGKSKSESKNKEKKHKKHKDKDKENDKEHKKHKHLHKDRSKDKDKEKKKDRTVHHDSGAELSSGWRTWRNMARPFGYFASSTQGCNWFCTADYRVQFVLWINYPEWKSGSRDSLKMEANNESKDALVDDIGLKSETNSDAPVDDTRPRELTGVMDLTTHFKLLPHFHQGGVQRVHLLDDTIGGVLLKELFQRNGVGMMVASDLYEGAWMAMVSDIPGLKELLQPLEGSGTLIRRTDEELVKELPSFVIVETEGHIIACAALFPYFEEKYGKVTAIAVSPDCYSQGQGDKLLGKMKKQRLCEEFTEYPETGFQEILEIGRLHSIKEFQFPESLLHRWNGNSGMCRDVGARLNFVNDAQFLLFSPTSEHLLLTYGHRHGSLLKIIVIDGDITVPVYTILEVPTYALEG
Length647
PositionHead
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.09
Grand average of hydropathy-0.567
Instability index36.54
Isoelectric point5.32
Molecular weight74283.95
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IEA:InterPro

GO - Biological Function
acetyl-CoA:L-glutamate N-acetyltransferase activity	GO:0004042	IEA:InterPro

GO - Biological Process
arginine biosynthetic process	GO:0006526	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.49|      15|      15|     253|     267|       1
---------------------------------------------------------------------------
  253-  267 (27.20/14.43)	E.KKHKK.HKDKDKEND
  269-  285 (19.29/ 8.32)	EhKKHKHlHKDRSKDKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.98|      19|      20|     199|     218|       2
---------------------------------------------------------------------------
  199-  218 (27.68/22.85)	QLDQLiQHASSLKETNLHIQ
  221-  239 (31.29/20.73)	DLDAL.REAFRLRESKKEIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.46|      14|      15|     152|     165|       3
---------------------------------------------------------------------------
  140-  163 (20.42/11.28)	YHssirakriyrYCGFYFSFQVIA
  164-  179 (22.04/12.71)	YH........dfFCKKPLSLSIFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.41|      25|      30|     428|     457|       4
---------------------------------------------------------------------------
  428-  457 (38.65/34.54)	KELFQR.NGVGMMVASDLYEgawmaMVSDIP
  460-  485 (37.76/21.25)	KELLQPlEGSGTLIRRTDEE.....LVKELP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15876 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IVAGKSKSESKNKEKKHKKHKDKDKENDKEHKKHKHLHKDRSKDKDKEKKKDRTVHHDSGAE
240
301










Molecular Recognition Features






MoRF SequenceStartStop




1) KEKKHKKHKD
2) KENDKEHKKHKHLHKDR
252
264
261
280