<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15874

Description Uncharacterized protein
SequenceMAKSNGNLDKWRDYFGTANSDIFDIIEYAVLVAAADCPKEFKLRRERIAEMLFTWKVKGKKESKANSSVGNHVDDVVNQVSNYSYGEAEALTEEIEEETQTFGEVMRIKDVIDNSQAESSELFECLRRLQLMALSVETLKATEIGKSVNSLRKHNSKDIRHLARTLIEDWKVLVDEWVNATAAFTGTESTPESMKASVVDQEEEGLPSPPLDDLAFFSAQTTSMELGQFFDGMDDDGNPRNSGEFNENRGNGRKPSLDNQNIPVRKQQSAECFGAAPKERKQEALIQKQTTVVKPNKPSGGNSGPGRQIRPSSEQKLKINETNFQQKSDKGTIQKRPMTSQQNKLRQSDEDAVQVKLEATKRKLQERYQEAENAKRQRTIQVMELHDIPKRAPNQGPGLKNPHMRPGNNNRHWGNGRR
Length418
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.954
Instability index45.79
Isoelectric point7.04
Molecular weight47193.16
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15874
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.27|      12|     113|     297|     308|       1
---------------------------------------------------------------------------
  297-  308 (24.30/11.64)	KPSGGNS..GPGRQ
  405-  418 (18.98/ 7.71)	RPGNNNRhwGNGRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.06|      19|      19|     327|     345|       2
---------------------------------------------------------------------------
  327-  345 (32.24/18.73)	KSDKGTIQKRPMTSQQNKL
  347-  364 (24.49/12.67)	QSDEDAVQVK.LEATKRKL
  367-  381 (16.33/ 6.29)	RYQEAENAKRQRTIQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      19|      21|     247|     267|       5
---------------------------------------------------------------------------
  247-  267 (29.21/23.74)	ENRGNGrkPSLDNQNIPVRKQ
  271-  289 (32.90/20.01)	ECFGAA..PKERKQEALIQKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15874 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFTGTESTPESMKASVVDQEEEGLPSPPLDDLAFF
2) GQFFDGMDDDGNPRNSGEFNENRGNGRKPSLDNQNIPVRKQQSAECFGAAPKERKQEALIQKQTTVVKPNKPSGGNSGPGRQIRPSSEQKLKINETNFQQKSDKGTIQKRPMTSQQNKLRQSDEDAVQVKLEATKRKLQERYQEAENAKRQRTIQVMELHDIPKRAPNQGPGLKNPHMRPGNNNRHWGNGRR
183
227
217
418










Molecular Recognition Features






MoRF SequenceStartStop




1) HDIPK
386
390