<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15873

Description Uncharacterized protein
SequenceMFSEWLSALPFSGGGFNDALVAEGLAEALMVFSSHNGSQTQQNADGQRHCILVAASKPYLLPTAVTQILKQRGIIEHTSNVVLADAETVAKAFPRCSVSLSVICPRKLPKLRAIYNAGKRNSQTADPPVDTSKNPNFLVLISEDFSEACAAFSDTEMESLASNQSLVEMDTSSVPPVSGPTATSNPSVMNQQPISAGSIPAAMEPLMVTSVSGPAPPRIPTSQVAAVSQSGLPISVFEEMVPDNENTKPTTPIVSVMTQSLGPFTGAAANIVILNGVTSAIPAAPSVLISGQQGVTSMTGFDPFGRTSQIAQTPVTVLTSGQLGVTSMSGFAPCARTDPINQNSIPESLTSMAPSTSGNSNLCISQLLSNIQGGTGAGNQTTPVMSEGNLPRCQIMQSGIGMHPNVPSEMGTGMRSGIGTMMPNPERTQQGQPRILPLGRNNSAEAHMSGNSNPCISPLLSNNHRDIGAGSQTAPVMIENFPRSQMMQSRRGRHQNVPRGMGTGILSGIGTMMPTPRMTRQGQSGILPLGRNNTGEANMSLSHQQTSVTFPLAQSSYVKFWEVTPKSVWQIGLKFELF
Length578
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.04
Grand average of hydropathy-0.144
Instability index44.17
Isoelectric point6.72
Molecular weight60789.42
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15873
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     506.05|      89|      89|     357|     445|       1
---------------------------------------------------------------------------
  132-  208 (102.22/36.71)	SKNP..NFLV..LISE.......................................DFSEACAAFSDTEMESLASNQSLVEMDtSSVPPVSGPTATSNPSVMN...QQP..ISA.GS...IPA...........AMEPLMV
  212-  336 (68.78/22.78)	SGPAppRIPTSQVAAVSQSGlpisvfeemvpdnentkpttpivsvmtqslgpfTGAAAN.I.VILNG.......VTSAI....PAAPSVLISG.QQGVTSMTgfdPFG.RTSQiAQTPVTVLtsgqlgvtsmsGFAPCAR
  357-  445 (174.30/66.74)	SGNS..NLCISQLLSNIQGG.................................TGAGNQTTPVMSEGNLPRCQIMQSGIGMH.PNVPSEMGTGMRSGIGTMM...PNPERTQQ.GQPRILPL...........GRNNSAE
  449-  536 (160.75/61.09)	SGNS..NPCISPLLSNNHRD.................................IGAGSQTAPVMIE.NFPRSQMMQSRRGRH.QNVPRGMGTGILSGIGTMM...PTPRMTRQ.GQSGILPL...........GRNNTGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15873 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGTGAGNQTTPVMSEGNLPRCQIMQSGIGMHPNVPSEMGTGMRSGIGTMMPNPERTQQGQPRILPLGRNNSAEAHMSGNSNPCISPLLSNNHRDIGAGSQTAPVMIENFPRSQMMQSRRGRHQNVPRGMGTGILSGIGTMMPTPRMTRQGQSGILPLGRNNTGEANMSLSHQQ
2) LASNQSLVEMDTSSVPPVSGPTATSNPSVMNQQPISA
373
160
545
196










Molecular Recognition Features






MoRF SequenceStartStop




NANANA