<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15872

Description Uncharacterized protein
SequenceMITSQSCSARETITIKRADASTDLREFTSLEGRKYFYNKVTRMSKWRMPNEVKLAHEKDTILHASDLGSIFVVKTLSPGADGSLVSAHGAKSSLISVSQAANLPTIMASESSSLSSKVSSPMIETVKIKNSSEPTSPAVANLEKIGIAVTLGNSVAPPNVKKDAAITEIGGATPSDEKTVELGPLVYENQAKAKSAFKTLLKSTNIGSDYTWDQAMRAVINDRRYGALKSLCERKQAFNEYLSQKKKLEAEERRVKQKKAREDFRIMLEDCKELSPSSRWSKVISILENDKRFKSVERAKDRDDLFEDYVEELDKKEYAKALEVQKHNRRGDRTSIVPLLLTSFVQASSQWQKVQDRLEIDERCSHLEKIDRLEIFQEYIRDLESEEEEQRKLRMIKDFAAYLAVSSNTSGSIVKDLFTDVMDELEKQVQVLSSRFDSDSSGTLSYILYCGESSCSEDVINMPPHRVRRNNDGQQPQPADPLNENVSHAKFRAAFQGDDLVTARIRDFMRMNPPEFYGSKSDEDPQLFLEEVWKITQVMHVSEEHSVELIVYRLKDLSYNWVISLRKGRGEGAIPIIWQEFQDAFLDKFFPLEMREANVEEFMNLGQGSMTIREYRLKFNQLAKYAPNLVADNRASMSKFVTGVSSYVVKECRSAMLNSDKNLSRLMTHA
Length670
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.539
Instability index41.66
Isoelectric point6.45
Molecular weight76069.37
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15872
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     340.77|      68|      68|     250|     317|       1
---------------------------------------------------------------------------
  190-  249 (81.03/54.82)	.......QAKAKSAFK...TLLKS.TNIGSDYTWDQAMRAVINDRRYGALKSLCERKQAFNEYLSQKKKLE
  250-  317 (109.10/76.50)	AEERRVKQKKAREDFR...IMLEDCKELSPSSRWSKVISILENDKRFKSVERAKDRDDLFEDYVEELDKKE
  319-  387 (94.72/65.39)	AKALEVQKHNRRGD.RtsiVPLLLTSFVQASSQWQKVQDRLEIDERCSHLEKI.DRLEIFQEYIRDLESEE
  388-  428 (55.93/35.43)	EEQRKLRMIK...DFA...AYL....AVSSNTSGSIV...................KDLFTDVMDELEKQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.07|      14|      16|     115|     128|       2
---------------------------------------------------------------------------
  115-  128 (23.81/13.46)	SSKVSSPMI...ETVKI
  131-  147 (19.26/ 9.72)	SSEPTSPAVanlEKIGI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15872 with Med35 domain of Kingdom Viridiplantae
Unable to open file!