<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15868

Description Uncharacterized protein
SequenceMANLTFQVPLQGFKRSRTGISESFSQGGAVVNPSTSDYASREVNSSAITGGNDQIGLQWGWDDDDSDVGTDIQALLPEFGDFGDFFENDALPFGEVVILSMDGNELISPFILKPPGTAESQTLMFPASDSVDVGSSPCPSMMDMQDQLLFPVVFSSFESFNQPPPPVILDDSLSKHQEVIRSAAVANQVNSTCATIAGEFDHLIKAAALMSFSPEYGAVETPTGENSHLIFRNPYVPKSREVETANSSSNSYVYSATPPLSPCFDACQEKSGVTVNLKAGTARHDTGSILQSKKYYTHIESGKGKTMISCLVLYVVALRVRLK
Length323
PositionKinase
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.09
Grand average of hydropathy-0.162
Instability index52.05
Isoelectric point4.58
Molecular weight34820.58
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15868
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.30|      21|      23|     119|     139|       1
---------------------------------------------------------------------------
  119-  139 (39.19/25.22)	ESQ.TLMFPAS.DSVDVGSSPCP
  143-  165 (31.11/18.46)	DMQdQLLFPVVfSSFESFNQPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.06|      23|      23|     212|     234|       2
---------------------------------------------------------------------------
  211-  233 (41.09/25.51)	SFSPEYGAVETP.TGENSHLIFRN
  234-  257 (32.97/19.22)	PYVPKSREVETAnSSSNSYVYSAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15868 with Med13 domain of Kingdom Viridiplantae
Unable to open file!