<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15867

Description Uncharacterized protein
SequenceMSPAALSNHPDSSSSSEPNILERRPPIPPLACPALGAIPSMSLQFQPILPAQQAQPYGSGSSQQFQPLGHANVAMPQPSQIQFPQPMQQVTGRPVVGRHSMPQGPPIPQDFQRNLPMSNNHMPGSGGPNLPLSSYNQVNADSSASQYQTQINDHRFPSGVQPWMPISNHNVNSVTTMQKTGELAAPLVVPEANYVFDPVETIQSDWIEHTSRKGKKGQTHQLTGENLQVLREESGYYYNKVTRTSKWRMPDEVKLAREKDSISHASDFGSIPVVKTSSPGADGSLVSVRGAKSSPIAVSPAANLLTSFASESSSLSGKVSSMMIETVEMKNSSEPSSPAVANSEKIGIAVTLGNSVAPPVSETTSAQDAVVYDDGFSPENREDVKKDAAITEIGGATPSDEKTVELGPLVYESKAAKSAFKTLLESANIGSDCTWDQAMRAVINDWRYGALKSLGERKQAFNEVSLQKKLEAEKRRVKQKKAREHFRIMLEDCKELSPSSRWSKAISLFEHDERFKAVERAKDREDLFEDYVEELEKKEHAKALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYIRDLESKEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAAGILNAKTNWRDYCIKIKDFAAYLAVSSNTSGSTAKDLFTDVMDELEKQLGVLIVGDAVSCDGGMVVSTDTVASVADGGGRGGDADDGARRMCGS
Length732
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.634
Instability index53.22
Isoelectric point5.74
Molecular weight80859.78
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15867
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      78.93|      14|      23|     509|     522|       1
---------------------------------------------------------------------------
  509-  522 (23.09/14.35)	FEHDERFKAVERAK
  535-  548 (21.13/12.55)	LEKKEHAKALEEQK
  552-  565 (20.65/12.11)	VEYLEFLKSCDFIK
  577-  588 (14.06/ 6.04)	LEADERCSRLEK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     109.82|      18|      19|      33|      51|       2
---------------------------------------------------------------------------
   33-   51 (29.03/19.33)	PALGAiPSMSLQFQPILPA
   55-   71 (28.83/14.83)	QPYGS..GSSQQFQPLGHA
  102-  117 (30.14/15.83)	PQ.G..PPIPQDFQRNLPM
  123-  135 (21.82/ 9.44)	PGSGG.P..NL...PLSSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.90|      11|      23|     168|     178|       7
---------------------------------------------------------------------------
  168-  178 (19.81/15.31)	NHNVNSVTTMQ
  193-  203 (20.10/15.64)	NYVFDPVETIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.56|      17|      18|     599|     616|       9
---------------------------------------------------------------------------
  598-  615 (25.49/22.84)	YIRDLESKE.EEQRKLrME
  616-  633 (26.06/17.37)	ELRKAERKNrDEFRKL.ME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.16|      18|      18|     367|     384|      10
---------------------------------------------------------------------------
  349-  364 (18.02/ 7.77)	..AVTLG.NSVAPPVSETT
  367-  384 (29.90/17.99)	QDAVVYD.DGFSPENREDV
  386-  404 (22.24/11.40)	KDAAITEiGGATPSDEKTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.85|      14|      20|     275|     294|      11
---------------------------------------------------------------------------
  275-  294 (14.27/25.41)	KtsSPGAD..GSLVSvrgaKSS
  298-  313 (19.58/10.36)	V..SPAANllTSFAS....ESS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15867 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQFQPILPAQQAQPYGSGSSQQFQPLGHANVAMPQPSQIQFPQPMQQVTGRPVVGRHSMPQGPPIPQDFQRNLPMSNNHMPGSGGPNLPLSSYNQVNADSSASQYQTQINDHRFPSGVQPWMPISNHNVNSVTTMQKTGEL
2) MSPAALSNHPDSSSSSEPNILERRPPIPPLACPALG
43
1
183
36










Molecular Recognition Features






MoRF SequenceStartStop




1) LERRP
21
25