<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15862

Description ATP-dependent DNA helicase Q-like 4A
SequenceMDFKKIKNTFDSVKVCIHSTLTGPHSWDGAVNSAGGSMSKDKLPKVNWTQHAAAHDNFSCQDKFLSSNILFSLPTQRPCAREEMNARSMACQIRSVTKLEAEKAWKLLTSLKLSPKSYTKPGKTLPLTKDTNTFSQHSHHTQIQRASDGNSAPARCRPVHRGVGENGENTDSTRFAGNCFPPNSSGAAESGNFVNRQSGVDTSVANISHARGIGDVSSSHAIGVSKTRESYSTCAEGTEEDDILLNIDVDQIVEHYQTNCTPRHSVSRFPPTTPVTNSQSLRGPGEKNLPPELSINCNHGLKLGHCPGALDHLQEMKDKLIEISNDLLDNVSELSSEQVEMLRQERSQLKQQIQHLEKFLQTVSGNEERKMSQCSATTLTSAFQHETPSAFQYETPSSFPSRINPTRLDTQFSGYNEPSHFDNWNSSSLSFDVTGGYGPSTAPVEREPYIPKYLEVNYVDGSNDKKWSSRDFPWTKKLEANNKKVFGNHSFRPNQREVINATISGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQVNIPAAYLSSNMEWTEQQEILRELNSDGCKYKFLFVTPEKVAKSDVLLRHLESLHARESLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPTVPVLALTATATLSVKEDVVQALGLANCVIFRQSFNRPNLRYTIVPKTKKCLEDIGNFIQDNHFDQCGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGSMDGAQRANIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLPSSCVLYYSYSDYIRVKHMISQGTVEQSPFGSGYGRSNVAASGRILETNMENLLRMAFFQHFFQVSYCENDVDCRRLLQLIHFGEKFESTNCRKTCDNCCKTHSCIEKDVTEVAKQLVELVKMTGQKFSSAHVLEVYRGSLSQYVKKHRHESLRLHGAGKHLAKGEASRVLRHLVTEDILVEDVKKSDLYGSVSSVLKVNESKAYNLFAGGQTVRLRFPSSVKASKLGKSEATPAKGSLTSGKQSPPRADPSSVPQPPFDPVLSAKLYTALRKLRAVIIKEAGEGVMAHHIYGDISLQEIGRKVPRTIDELLDINGIGKVKITKYGDRVLETIEATIRAHNKSAKMSSSGNDTTDSGKKRRNSINVRNGISKDEDYFTENTVCTKKRVLKKHAEVIDYSDPRYFDEFMDGDIDFDENMMPQ
Length1227
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.508
Instability index42.72
Isoelectric point8.36
Molecular weight136855.13
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15862
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.23|      40|     132|     261|     300|       1
---------------------------------------------------------------------------
  261-  300 (74.91/44.25)	TPRHSVSRFPPTTPVTNSQSLRGPGE.KNL.PPELSINCNHG
  395-  436 (65.32/37.63)	TPSSFPSRINPTRLDTQFSGYNEPSHfDNWnSSSLSFDVTGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.11|      39|     282|     460|     507|       2
---------------------------------------------------------------------------
   39-   86 (61.82/32.02)	SKDKlpkvNWTQHaaahdNFSCQDKFLSSN.ILFSLPTQRPCAREEMNA
  462-  501 (68.29/51.15)	SNDK....KWSSR.....DFPWTKKLEANNkKVFGNHSFRPNQREVINA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.91|      23|     282|     839|     861|       3
---------------------------------------------------------------------------
  839-  861 (38.36/25.06)	GYGRSNVAASG.RILETNMENLLR
 1098- 1119 (29.39/17.53)	.YGDISLQEIG.RKVPRTIDELLD
 1122- 1144 (30.16/18.17)	GIGKVKITKYGdRVLET.IEATIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.80|      25|     410|     746|     794|       4
---------------------------------------------------------------------------
  673-  697 (47.23/39.12)	C..VIFRQSFNRPNLRYTI...VPKTKKCL
  765-  794 (36.57/27.65)	CatVAFGMGINKPDVRFVIhhsLPKSIEGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.98|      44|     450|     515|     559|       6
---------------------------------------------------------------------------
  515-  559 (72.73/55.27)	GGGKSLTYQ.....LPALICPGItLVISPLVSLIQDQIMHLLQVNIPAAY
  963- 1011 (66.25/45.22)	GAGKHLAKGeasrvLRHLVTEDI.LVEDVKKSDLYGSVSSVLKVNESKAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.34|      24|     935|      98|     121|       9
---------------------------------------------------------------------------
   98-  121 (42.69/24.41)	KLEAEKAWKLLTSLKLS.....PKSYTKP
 1035- 1063 (37.65/20.73)	KSEATPAKGSLTSGKQSppradPSSVPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.20|      29|     156|     703|     736|      12
---------------------------------------------------------------------------
  703-  736 (42.27/42.50)	FIQdnHFDQcgIIYCLSRMDCEKVAeKLQEYGHK
  864-  892 (56.93/34.91)	FFQ..HFFQ..VSYCENDVDCRRLL.QLIHFGEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15862 with Med34 domain of Kingdom Viridiplantae
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