<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15860

Description Uncharacterized protein
SequenceMANICEKLSKWREYFVSSKTNIFEIIELAIIISAIDHPKEFKLKRDRVAQLLFSCKITRGNGCDKVEFVVPNADNVVTHADKDVQNTVNVDVDEEEPENSSDEEEEESRINKEVLRNKSIIDDYRNETDLSVYASLRELRKMDLTLETLKATGIGKSVNALRKHKSANIQNLAKKMVENWSEMVNEYCLKAQAAFADTERIPESPKATVAGEEEERLPSMPLEDLSFVLNQATSFTLSRVLDGLDDDGNALSSGQTNNHREVGRKASNPVSRQQNVTAAPEANPVRRQQNVTAAPNESNPVRRQQNVTAAPEANPVRRQQNLTAASKVSNLVSRQQNVTAAPEANPVRRQQNVIAASKVSNPVSRHQNVTAAPEAKPVRRHQNVTAAPNVSNPVRRQQNVTVAPKDKKGDHQKKQTSLAKPNKPPGDNSMPGRPIKPTFQRKLNNDDMKFQHKSDRSKIQTRPVPTQPNKLKRPEEDAEQVKLEAAKRKLQERYQEVERAKRQRMVQVVELCDMHKKEHPKHGPRARNPHMRPANHNRPLVNRRQ
Length545
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.03
Grand average of hydropathy-0.968
Instability index57.57
Isoelectric point9.62
Molecular weight61600.65
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15860
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     240.89|      13|      14|     281|     293|       1
---------------------------------------------------------------------------
  267-  278 (24.39/11.22)	..SNPVSRQQNVTA
  281-  293 (31.26/16.31)	E.ANPVRRQQNVTA
  297-  309 (31.64/16.60)	E.SNPVRRQQNVTA
  312-  324 (29.40/14.93)	E.ANPVRRQQNLTA
  327-  340 (22.21/ 9.61)	KvSNLVSRQQNVTA
  343-  355 (29.09/14.71)	E.ANPVRRQQNVIA
  358-  371 (24.90/11.60)	KvSNPVSRHQNVTA
  374-  386 (28.46/14.24)	E.AKPVRRHQNVTA
  389-  401 (19.55/ 7.64)	NvSNPVRRQQNVT.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.30|      43|     106|      95|     143|       2
---------------------------------------------------------------------------
   95-  143 (61.24/60.25)	EEPENSSDEEEEEsRINKEVLRNKSIIDDYRNETDLSvyaslRELRKMD
  203-  245 (71.07/51.15)	ESPKATVAGEEEE.RLPSMPLEDLSFVLNQATSFTLS.....RVLDGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.92|      28|      28|     433|     460|       3
---------------------------------------------------------------------------
  433-  460 (51.02/29.16)	RPI..KP.........TFQRKLNNDDMKFQHKS...DRSKIQ
  462-  503 (28.89/13.69)	RPVptQPnklkrpeedAEQVKLEAAKRKLQERYqevERAKRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15860 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SRVLDGLDDDGNALSSGQTNNHREVGRKASNPVSRQQNVTAAPEANPVRRQQNVTAAPNESNPVRRQQNVTAAPEANPVRRQQNLTAASKVSNLVSRQQNVTAAPEANPVRRQQNVIAASKVSNPVSRHQNVTAAPEAKPVRRHQNVTAAPNVSNPVRRQQNVTVAPKDKKGDHQKKQTSLAKPNKPPGDNSMPGRPIKPTFQRKLNNDDMKFQHKSDRSKIQTRPVPTQPNKLKRPEEDAEQVKLEAAKRKLQERYQEVERAKRQRMVQVVELCDMHKKEHPKHGPRARNPHMRPANHNRPLVNRRQ
238
545










Molecular Recognition Features






MoRF SequenceStartStop




1) GRPIKPTFQRKLNNDDMKFQH
2) HQKKQ
3) KKEHPKHGPRARNPHMRPANH
4) KPVRRH
432
411
516
376
452
415
536
381