<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15858

Description Mediator of RNA polymerase II transcription subunit 33B
SequenceMGYRLYMELLKRYAFSLPSLVNGPNYRKIMESINHTLHLSQIFELQGSESGKHVIEYVFTVVWQLLDASLDDEGLLALTVEKKSMWPVATQEMEISNRDDLAGKRVEHREGLCRMNTVLAIEIIGELFGDKLTSMILYLARRNMPTHWDSFMQHLQLLVSNSSALRNSKIICPEALILLISKNRGVRSRECITSSRKFLHAVMASGSLVFSASRGDDASASVLWLPIDLFLEDTMDGTQVAATSAADTLAGLVKALQAVNFTSWRNTFFGLWISALRLVNRERDPSEGPVPRLDTCLCLLLSITPLAITNIIKEGENEGCSSDQRTEATGERRQALVSSLQQLYDYEGLLNPPLPAIPLANQATLKAMMFLSGISGGNEYFDGMRLNDIPVNCAGNLWHLIVEACIARNILDTSAYLWPGYVKGQCNQVPRNMSGPSPSWSSLMKGSLLTPPMVSVLVSTPASSLAEIEKIYEIAVNGPAEDKISAATILCGASLARGWNIQEHTILFIIRLLSPCVPSDYCGTDSHLIGYAPFLNVLLVGISSVDCIQIFSLHGLVPQLVGALIPICEAFGSCPPNVSWTLMSEEITSHAVFSNAFTLLLTLFRFDQPPLEHLTRDVPMGSHLTPEFLLLVRNSQLVFSEDLLKDQSKSNQLSRVLSQLPREPIVMDSFPKLKYWYRQHQACIASPLSGLVPGSPVHQIVEALLNFMFRKINKAGQSLKPPTSSGSNSSGSGNEEISPHLKLPAWDILEAVPFVLNAALTACAHGALSPRELATGLKDLADFLPASLATITSYFSAEVSRGIWNPASMNGTDWPSPAANLATVEQQIKKILAATGVDVPSLSVGGSSPAVLPLPLAILVSLTITYKLDRDTDRFLNFIGAAVSNLATSCPWPCMPVMASLWAQKVRRWSDFLVFSASRTVFHHSRDAVVQLLRACFTATLGLDTSSTESNGRVGSLLGHGFGSHFSGGMSAVAPGILYLRVHRAVKNVMSMAEEIVSLLMHFVRNIADNGVTARELEKLKKTRSEISSSGFPASCQVSLAAAMKRAKLASSLGASLIWITGGLSLVQSLLKETLPSWFISAHGSEPNGGISEGMVARLRGYSLAHLAVISGTFVWGVDSLSSTSKWRPSILGAHMEFLASALDGKISLGCNKATWRAYVSGFISLILGCAPRWLLEVDLEVLKRLSKGLKRWDEEALALALLENSGVGAMGTAAEMILEGGLSFAR
Length1227
PositionTail
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.170
Instability index43.27
Isoelectric point6.63
Molecular weight133352.63
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15858
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.19|      31|      93|     506|     543|       1
---------------------------------------------------------------------------
  506-  543 (43.32/51.65)	ILFIIRLLSPcvPSDYCGTD....SHLigyAP.FLnvLLVGIS
  600-  635 (47.86/31.16)	LLTLFRFDQP..PLEHLTRDvpmgSHL...TPeFL..LLVRNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.42|      32|      93|    1076|    1117|       2
---------------------------------------------------------------------------
  263-  307 (43.42/18.56)	SWrntffglWISAlRLVNRERDPSEGPVPRLDTclcllLSITPLA
 1077- 1108 (60.00/47.70)	SW.......FISA.HGSEPNGGISEGMVARLRG.....YSLAHLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.20|      29|      93|     937|     973|       3
---------------------------------------------------------------------------
  942-  971 (49.99/36.49)	GLDTSSTESNGRvGSLLG.HG..FGSHFSGGMS
 1117- 1148 (43.21/13.87)	GVDSLSSTSKWR.PSILGaHMefLASALDGKIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.92|      20|      95|     782|     804|       4
---------------------------------------------------------------------------
  198-  224 (30.92/13.27)	FLHAVMASGSLVFSA..SRGddasasvLW
  783-  804 (35.00/27.36)	FLPASLATITSYFSAevSRG.......IW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.62|      15|     174|     389|     403|       8
---------------------------------------------------------------------------
  389-  403 (30.33/18.44)	IPV.....NCAGNL.WHLIVE
  565-  585 (21.29/10.63)	IPIceafgSCPPNVsWTLMSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15858 with Med33 domain of Kingdom Viridiplantae
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