<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15855

Description Uncharacterized protein
SequenceMLFSLGQRADSSTGWREFTRPEGRKYYYNKVTRTSKWRMPDEVKLAREKDITSHTSDFGSIPVVKTSSSGADSSLVSAHGAKSSPIAVSPTANLPTILASESSSLSGKVSSMMIETVEMKNSSEPSLPAVADSEKIGIAVTLGNSVAPPVFETTTAQDAVVYGDGFSSENRENVKKNAAITEIGGATPSDEKTVELGPLVYESKAAKSAFKTLLESVNIGSDCMWDQAMRAVINDRRYGALKSLGERKQAFNEVSLQKKLEAEERHVKQKKAREDFRIMLEDCKELSPSSRWEANSIFKHDERFKAAERAKDHEDLFEDYVEELEKKEHAKALEEQKHNKVEYLECLKSCDFIKVFVLWRKVQDRLETNERCSLLEKIDRLEIFQEYIRDLESKEEEQRKLWMEELRKAERKNRDEFRKLMEEQVAAGILNAKTNWRDYYIKIKDFAAYPAVSSNTSGSTAKNLFTDVMDELEKQYLDDKSQIKDAVRMAEIGLTLAWKLDDFKVAIAKYISSPPMSDTNLKFVFEELLERAREKEEKEAKKRKRLADEFYELLHASKILNDDDILDASVVSCVSTDILNADDILDASIVSSASTDTE
Length598
PositionUnknown
OrganismCapsicum annuum (Capsicum pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.615
Instability index41.87
Isoelectric point5.31
Molecular weight67769.60
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15855
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.29|      18|      18|     560|     577|       1
---------------------------------------------------------------------------
  560-  577 (35.05/25.96)	LNDDDILDASVVSCVSTD
  579-  596 (33.24/24.24)	LNADDILDASIVSSASTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.30|      18|      18|     388|     405|       2
---------------------------------------------------------------------------
  379-  396 (27.22/15.17)	DRLEIFQEYIRDLESKE.E
  397-  415 (27.09/15.06)	EQRKLWMEELRKAERKNrD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.26|      18|      19|     308|     325|       3
---------------------------------------------------------------------------
  308-  325 (31.32/23.49)	ERAKDHEDLFEDYVEELE
  328-  345 (30.94/23.11)	EHAKALEEQKHNKVEYLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.34|      20|      20|     102|     121|       4
---------------------------------------------------------------------------
   67-  102 (17.37/ 9.77)	S..S.SGADSSLVsahgaksspiavsptanLP.TILASES
  103-  122 (33.58/26.78)	S..SLSGKVSSMM.................IE.TVEMKNS
  123-  144 (14.40/ 6.66)	SepSLPAVADSEK.................IGiAVTLGN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.48|      13|      20|      15|      34|       5
---------------------------------------------------------------------------
   15-   30 (21.95/24.00)	WReftRPEGRKYYYNK
   37-   49 (24.54/ 8.26)	WR...MPDEVKLAREK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.91|      12|      20|     186|     197|       6
---------------------------------------------------------------------------
  186-  197 (21.10/16.11)	ATPSDEKT....VELG
  205-  220 (14.81/ 8.84)	AAKSAFKTllesVNIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.54|      17|     271|     256|     284|       7
---------------------------------------------------------------------------
  256-  272 (26.70/34.83)	LQKKLEAEE..RHVKQKKA
  288-  306 (25.84/ 6.85)	PSSRWEANSifKHDERFKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15855 with Med35 domain of Kingdom Viridiplantae
Unable to open file!