<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15854

Description Mediator of RNA polymerase II transcription subunit 33B
SequenceMEVPMQCSLWESVLELTKVAQEKGGDPLVWAIQVSSCLSSSGVSLPSLELANFLVSHICWENNLPIAWKFLEKALVIKIVSPIIVFPLLSSRVIQNRHLRPAAYRLYMELLRRHIFTLKIHVNMQSYKKILNFLDSVLHLTEVFGMHADEPGVLVVEIIFSIVWQLLDASLDDEGLLQLTPEKKSRWPTKTEDMEIDGCIADMERNEHKERLKNLNTLLAIELIGQFLQNKATARILYLARQNMPVHWGAFVQHIQLLAGNSSALQSSSIISPKALLQLASDAHNLIKANSLQEYVRSTSRSLDTCAGFCFGSSRSSLWLPLDLLLEDAMDGSQVNATSAIEIITDLVKSLQAINATTWHETFLGLWMAALRLVQRERDPIEVPVPRLDTRLCMLFSLITLVIADLIEEEESEAFEGTRRGDVVSCLQYLGDYQSLLTPPQAVTTAANQAAAKAMMFRSGINTSTSYFECINMKDMPTNCSGNLHHLIVEACIARHLLDTSAYFWPGYVNGHMNQLPASMPTQVPGWSSFMKGAPLTPAMINTLVSAPASSLAELEKIFEMAVKGANDEKIAAATILCGASLILGWNIQEHTVNFITRLLSPPVPTDYSGKESHLIGYAPMLNVLLVGIAPVDCVQIFSLHGMVPQLAASSMTICEVFGSCAPNISWTLTTGEDISVHAVFSNAFALLLKLWRFNHPPLEYRVGDVPPVGCQLTPEYLLLVRNSHLVSSGNMLKDPNRRRLATVASSSSPNPIFVDSFPKLRVWYRQHLACIASTLSGLVNGTLVCQTVDVLLNMMFKKINSGSQSLISVTSGSSSSSGTGSEDTSPRPKLPAWDILEAIPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLPTIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKRILAATGVDVPSLAAGGSSPAILPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLSNNHAVIQLLKSCFNATLGLNSSSISSNGGIGALLGHGFGSHFYSGISPVAPGILYLRVYRSIRDIMFLREEIVLLLMQSISEIAHSELPRQRLNKLKIPKNGKKFGNVSLAATMTRVKLAALLGASLLWLSGGSGLVQSLIKETLPSWFLSVHNTNQEGDIGLLVPMLKGYALAYFAVLCGAFASGVDSLSMASKRRPKIIGRHVEFIASVLDGKISLGCDPATWHAYVSGFVSLMVGCTPTWVFEVDAELLKRLSKGLRRWHEEDLALALLSIGGIGTMGSAAELIMEASS
Length1304
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.08
Grand average of hydropathy0.232
Instability index48.00
Isoelectric point6.69
Molecular weight142257.62
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15854
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     235.61|      59|     296|     882|     952|       1
---------------------------------------------------------------------------
  890-  948 (99.98/49.78)	GVWKPVFMNGTDWPSPAANLSNVEEQIKRILAATGVDVPSLAAGGSSPAILPL....PLAAFV
 1141- 1188 (51.76/17.93)	............WLSGGSGL..VQSLIKETLPSWFLSVHNTNQEGDIGLLVPMlkgyALAYF.
 1189- 1241 (83.87/32.32)	AVLCGAFASGVD......SLSMASKRRPKIIGRHVEFIASVLDGKISLGCDPA....TWHAYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.48|      47|     131|     477|     526|       2
---------------------------------------------------------------------------
  477-  526 (88.38/65.04)	PTNCSGNLHHLIVEACIARHLL......DTSAYFWpgyVNGHMNQLPASMPT..QVPG
  605-  659 (76.10/47.11)	PTDYSGKESHLIGYAPMLNVLLvgiapvDCVQIFS...LHGMVPQLAASSMTicEVFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.68|      52|     297|     419|     471|       4
---------------------------------------------------------------------------
  419-  471 (88.11/56.52)	RRGDV..VSClQYLGDY............QSLLTPP..QAVTTAANQAAAKAMMFRSGINTSTSY...FECI
  702-  772 (71.57/41.35)	RVGDVppVGC.QLTPEYlllvrnshlvssGNMLKDPnrRRLATVASSSSPNPIFVDSFPKLRVWYrqhLACI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.03|      45|      47|     259|     304|       5
---------------------------------------------------------------------------
  259-  304 (67.02/44.21)	AGNSSALQSSSIISP.KALLQLASDAhNLIKANSLQEYVRSTSRSLD
  307-  352 (72.01/42.89)	AGFCFGSSRSSLWLPlDLLLEDAMDG.SQVNATSAIEIITDLVKSLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     196.07|      64|     467|     527|     602|       9
---------------------------------------------------------------------------
  527-  602 (83.99/67.51)	WSSFMkgapLTPAMINTLVSAPASSLAELEKIFEmAVKGANDEKIAAATilcGASLILGWNIQEHtvnFITRlLSP
  997- 1060 (112.08/56.37)	WSDFL....VFSASRTVFLSNNHAVIQLLKSCFN.ATLGLNSSSISSNG...GIGALLGHGFGSH...FYSG.ISP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15854 with Med33 domain of Kingdom Viridiplantae
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