<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15849

Description Pre-mRNA-processing protein 40A
SequenceMNEKSVSVSAIEISSIMPRLQSSLSHNREHIRINKNQQILDVVLSPPASPSPVHNSSNPAKPIKKNLCLKTLDQKIEKQAKANTEFSTKYERDKNYWKVAINELRMKVKSFVDSYLCADMANNPPPSGPQPLWPPSVGSTPPQGFGSFPMQFRPALSTQQGQQFVPPISASPQYRPIGQTPNVGMPPGQGQIPQFSQIMQQFPLRSGQPGHGPHSSQAIQMPYIQSSMPQTQQVNPTLNNHMPGVSGAGNPFSSSYTVQSSSQMNVPTFPAGGQPWLSSGSQTTPLAAPTPLTSHQSSAVAPAVPASTASQQTASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTPLERADASTVWKEFTTADGRKYYYNKETKQSKWTIPDELKLARELAETGGQVVQTGTSTNPGVQVSEAVTPTEQPSAVTLVSSTPSSTVSGVASSPVPVTPALSDVSTPPLVASGSSAFPTVSPAVTSSAGVSSPAALGSAVSAALANAYLTQMSGIGNVSPQVASSLSGASSQDIEEAKKVMAVSGKINVVPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRIIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRLRQRKAKDEFTKMLEESKELTSSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVDTQWRKVQDLLEDDERCLRLEKLDRLEIFQEYIRDLEKEDEEQRKLQKEQLRRAERKNRDAFRKMMEEHIAVGMLTAKTSWRHYCQMVKESVAYQAVASNTSGSTPKDLFEDAAEELEKQYHEDKIRVKDVVKSEKITISSTGTFDDFKVAILEGIGSPSINDVNLQIKHSKLVMFGSVLGCTISVWEIEVLGP
Length904
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.626
Instability index55.85
Isoelectric point7.18
Molecular weight100422.88
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15849
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     155.83|      19|      21|     172|     190|       1
---------------------------------------------------------------------------
  129-  144 (32.41/13.53)	P.Q..PL..WPPSVG...STPPQG
  149-  170 (21.27/ 6.52)	PmQFRPA.LSTQQ.GqqfVPPISA
  172-  190 (41.16/19.03)	P.QYRPI.GQTPNVG...MPPGQG
  193-  212 (28.87/11.30)	P.QFSQImQQFPLRS...GQPGHG
  229-  247 (32.12/13.34)	P.QTQQV.NPTLNNH...MPGVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.86|      38|      38|     317|     354|       2
---------------------------------------------------------------------------
  271-  297 (40.06/22.36)	......AGGQPW.....LSSGSQTTPLAAPTPLTSHQS
  317-  354 (74.63/48.37)	WQEYEAADGRRYYYNKITKQSSWEKPLELMTPLERADA
  358-  390 (59.18/36.75)	WKEFTTADGRKYYYNKETKQSKWTIPDEL..KLAR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     367.88|      66|      66|     624|     689|       3
---------------------------------------------------------------------------
  543-  614 (89.09/55.20)	EKSADEEpflyatkQEAKNAF.KALLES...ANVESDWTWEQTMRIIINDKRYGALKTLGE...RKQAFNEYLMQRKKQ
  615-  682 (97.88/61.33)	EAEERRL.....rqRKAKDEFTKMLEES...KELTSSTRWSKAVTMFEDDERFKAVEREAD...REDLFRNYLVDLQKK
  683-  749 (95.79/59.87)	ERSKAQE.....eyRRNRLEYKQFLETC...GFIKVDTQWRKVQDLLEDDERCLRLEK.LD...RLEIFQEYIRDLEKE
  752-  830 (85.12/52.43)	EQRKLQKeqlrraeRKNRDAFRKMMEEHiavGMLTAKTSWRHYCQMVKESVAYQAVASNTSgstPKDLFEDAAEELEKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.08|      36|      37|     408|     443|       4
---------------------------------------------------------------------------
  408-  443 (60.62/37.28)	PGVQVSEAVTPTEQPSAVTLVSSTPSSTVSGVASSP
  457-  482 (41.90/23.24)	PLVASGSSAFPTVSP.AV.........TSSAGVSSP
  487-  520 (45.56/25.99)	SAVSAALANAYLTQMSGIGNVSPQVASSLSGASS..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15849 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADMANNPPPSGPQPLWPPSVGSTPPQGFGSFPMQFR
2) ALSTQQGQQFVPPISASPQYRPIGQTPNVGMPPGQGQIPQFSQIMQQFPLRSGQPGHGPHSSQAIQMPYIQSSMPQTQQVNPTLNNHMPGVSGAGNPFSSSYTVQSSSQMNVPTFPAGGQPWLSSGSQTTPLAAPTPLTSHQSSAVAPAVPASTASQQTASDWQ
3) ELAETGGQVVQTGTSTNPGVQVSEAVTPTEQPSAVTLVSSTP
118
155
391
153
318
432










Molecular Recognition Features






MoRF SequenceStartStop




NANANA