<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15844

Description Uncharacterized protein (Fragment)
SequenceEVPYLPRLQNTLSPCISSPLYQYLQHLGLSSSRTLLADDATPISSPLTPLLTSSTGSTEAEKAISKPSKVQAVLKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAVHNHGFDPDRLLVAEAFLGKGLFKKRLSYHAKGKCGMMVRPECRLTVVLREITPEEEAEIAKLRVSNFKKLSKRERRLVPHKLIETTPIWNRKGKPRSSGADKKESPSRWEKILLSAPYLLTCAYDSSVYNASHVHASDEKIKINLGFALGKKHVLRHSLGVQLLSRHSRACRLDLTVSVGMSLGLKDVRVFNKVMLGKWLWRFGIGVMRRSRKADGQISVPENQVYVNDKFFKKKIVRIDSFDTVDRKKKSMEEIEDLIECSLSHVILVPTQDIYMGPTEEEKAEVAETGISLQELHESQTLMFPASDSVDVGSSPCPAMMDVQDHLLLPVVFSSFESFNQPLPPAILDDSLTKHQEVIRSAAVANQVNSTSASIAGEFDHLIKATALMSFAPEYGAVETPTGENSHLIFRNPYVPKSREVETANSSSNSYVYSATPPLSPCFDACEEKSGLTVNLKAGTARHDTGSIIQSKKYYTHIESGKEKNDDKLSGYVFICKIRHTVLSSSGCLPVGMNRMSGSISRNQSQGEAVVYGDNLSIKSELKKKEIIPVRIAGDIDGGLLDGTLNAPVGVWRSVGVSKGMKQPTAGLESCHSVQHNSFIEDSC
Length730
PositionKinase
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.271
Instability index52.50
Isoelectric point9.12
Molecular weight80373.39
Publications
PubMed=29089032

Function

Annotated function The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. This protein binds specifically to 23S rRNA. 
GO - Cellular Component
large ribosomal subunit	GO:0015934	IEA:InterPro

GO - Biological Function
structural constituent of ribosome	GO:0003735	IEA:InterPro

GO - Biological Process
translation	GO:0006412	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15844
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.48|      24|      24|     503|     526|       1
---------------------------------------------------------------------------
  503-  526 (42.09/25.55)	GEFDHLIKATALMSFAPEYGAVET
  529-  549 (36.71/21.42)	GENSHLIFRN...PYVPKSREVET
  554-  573 (31.67/17.54)	SN.SYVYSATPPLS..PCFDACE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.86|      21|      24|     428|     451|       3
---------------------------------------------------------------------------
  428-  448 (40.18/32.02)	LMFPAS.DSVDVGSSPC.PAMMD
  453-  475 (27.68/11.97)	LLLPVVfSSFESFNQPLpPAILD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15844 with Med13 domain of Kingdom Viridiplantae
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