<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15844

Description Uncharacterized protein (Fragment)
SequenceEVPYLPRLQNTLSPCISSPLYQYLQHLGLSSSRTLLADDATPISSPLTPLLTSSTGSTEAEKAISKPSKVQAVLKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAVHNHGFDPDRLLVAEAFLGKGLFKKRLSYHAKGKCGMMVRPECRLTVVLREITPEEEAEIAKLRVSNFKKLSKRERRLVPHKLIETTPIWNRKGKPRSSGADKKESPSRWEKILLSAPYLLTCAYDSSVYNASHVHASDEKIKINLGFALGKKHVLRHSLGVQLLSRHSRACRLDLTVSVGMSLGLKDVRVFNKVMLGKWLWRFGIGVMRRSRKADGQISVPENQVYVNDKFFKKKIVRIDSFDTVDRKKKSMEEIEDLIECSLSHVILVPTQDIYMGPTEEEKAEVAETGISLQELHESQTLMFPASDSVDVGSSPCPAMMDVQDHLLLPVVFSSFESFNQPLPPAILDDSLTKHQEVIRSAAVANQVNSTSASIAGEFDHLIKATALMSFAPEYGAVETPTGENSHLIFRNPYVPKSREVETANSSSNSYVYSATPPLSPCFDACEEKSGLTVNLKAGTARHDTGSIIQSKKYYTHIESGKEKNDDKLSGYVFICKIRHTVLSSSGCLPVGMNRMSGSISRNQSQGEAVVYGDNLSIKSELKKKEIIPVRIAGDIDGGLLDGTLNAPVGVWRSVGVSKGMKQPTAGLESCHSVQHNSFIEDSC
Length730
PositionKinase
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.271
Instability index52.50
Isoelectric point9.12
Molecular weight80373.39
Publications
PubMed=29089032

Function

Annotated function The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. This protein binds specifically to 23S rRNA. 
GO - Cellular Component
large ribosomal subunit	GO:0015934	IEA:InterPro

GO - Biological Function
structural constituent of ribosome	GO:0003735	IEA:InterPro

GO - Biological Process
translation	GO:0006412	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15844
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.48|      24|      24|     503|     526|       1
---------------------------------------------------------------------------
  503-  526 (42.09/25.55)	GEFDHLIKATALMSFAPEYGAVET
  529-  549 (36.71/21.42)	GENSHLIFRN...PYVPKSREVET
  554-  573 (31.67/17.54)	SN.SYVYSATPPLS..PCFDACE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.86|      21|      24|     428|     451|       3
---------------------------------------------------------------------------
  428-  448 (40.18/32.02)	LMFPAS.DSVDVGSSPC.PAMMD
  453-  475 (27.68/11.97)	LLLPVVfSSFESFNQPLpPAILD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15844 with Med13 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA