Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MAEKLRKRKFVCISWCFLCKEADEDVDYILIHCKLAKGGLHQISWFQFLPHESDVNSLVDKRVKLDKKDAATFLVLSSHLQLQKERFLSTWTNSFVGPWDPSQGLYNPDEKIKLWLFLPGQHSSVVEKAQSAVSKLRVLASGLWVAPGDSEELAAALSQALRNCMERTLRGHSYVRYGDVFTKYRPFSQSEELFRKGQPVVEFIFAATEEAIFVHVIISAKHIRALSSGDIDRISENASNVSGEGLPVIVSPHGMRGRLTGCCPGDLVKQVYLSSGKFSASNGIVGLPCNVSQSGYQLKGQNCYVEVSFGCTAPGNNNIQESSNVQNNSSRPIKTEASAVANVVQSKIPDNCGRMLIYPPEAVLVPVVQTACARSSLKRFWLQNWIGPSLSFTSSFMHCFDYHSDAKVNSMDGSWLDANVIGSNRRYNSSSNSNCSSLSSTSTSSSDSDYKTSGTGDLEADADSLMCRQSGLSSLDRSQNDNLKTGFKRSRTGISESFSQGGAVVNPSTSDYASMEVNNSAITGGNDQLGLQWGWDDDDRDVGMDIQALLSEFGDFGDFFENDALPFGEPPGTAESQTLMIPASDSVDVGSSPCPSMMDVQDQLLLPVGFSSFESFNQPPPPAILDDSLSKHQEVIKSAAVANQVNSTTASIAGEFDHLIKAEALMSFAPEYGAVETPTGENSRLIFRNPYVPKSREVETANSSSNSYVYSATPPLSPCFDACEEKSGVTVNPKAGTARHDTGSIIQSKKYYTHIESGKEKNDDKLSGYVRSCASRETQVAQSPFSGFNSTNSVKGIHNKTDKANEGLLKAGSSGQSIKTVLATEVECLMCQAFMCKIRHTLLSSSGCLPVGMSRMSGSTSRNQSQGEAVVTGDNLSIKSEMKKKEIIPVRIAGDIDGGLLDGTLNAPVGVWRSVGVSKGMKQPTAGLESGHSVQHNSFIEDSMLAYGLRQPLQELLDGMALLVQQATSLVDVALDADSNDGSFGWLALQEQWRRGFSCRPSMVHAGCGGVLASCHSLDIAGVELIDPLSADVPASFTLTLLQNDIKAALKSAFGTMEGPLSVVDWCKGRSQSNDGGISGDGFSAESTASASECRDSSSTISLSVGEPISPSQSSAGGSSGLRDGIRVDEASERRLSQDTCLSESENLLGSRLRPTLAAVPYPAILLGYQDDWLKTSPSSLQIWEKAPFEPYAMPKNMTYYVVCPDINALTTAATDFFQQLGTVYETCKLGTHSPQCMGNEMEIDSGKNASSGFVLIDCPQSMKIDSSNASMLGSISDYFLALSNGWDLESYLKSLSKVLRNLKLSSCLTMNPKEGSTGPCTVIYVVCPFPEPLAVLQTVIESSIAVGSVVLSSDKERRSTLHNQVGKALSYSAAVDEALSNVLTLSGFCIPKLVLQIVTVDAIFRVTSPALSELVILKEIAFTVYNKARRISRGSSSDMVQSSSMSGRSHPLMMQMTSQVPGMWKDCVGPRGIGTSLQRETDLDASLRPGSWDNWQTSRGGGLGCEPNRIRDFSFQDEIRYLFEPLYVLAEPGSLDRGLSFPISGNPMTESSKLLSDDGTSGGDTGLNTQSETSEPDGFGSARQRSLPSLHCCYDWTEDWRWLVCIWTDSRGELLDNHIYPFGGISSRQDTKGLQSLFVQILQQGCQILQACSPEAANAKPRDFVIARVGSFLELECQEWQKALYSIGGSEVKKWSLQLRRSVPDGMTASSNGTSLPQQEIGGLSQPSTRKQLIGGQGIADNSRGLLQWVQSISFVSLSVDHSLQLMVQAESTSLGTSQSSGIMSQPGYLEGYTPVKSLGSTPTSYILIPSPNMRFLPPIGLQLPTCLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPTMRRDARSISKEEWPSILSVSLVDYYGGSNIIQEKFLKGVVKTGGRGTGSEARDVETATHLILENIAAELHALSWMTVSPAYLERRSALPFHCDTVLRLRRLLHFADKEVSRQPEKSQGLSSSRTLLADDATPISGSTEAEKAISKPSKVQAVLKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAVHNHGFDPDRLLVAEAFLGKGLFKKRLSYHAKGKCGMMVRPECRLTVVLREITPEEEAEIAKLRVSNFKKLSKRERRLVPHKLIETTPIWNRKGKPRSSGAGAVAE |
Length | 2171 |
Position | Kinase |
Organism | Capsicum baccatum (Peruvian pepper) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.240 |
Instability index | 51.60 |
Isoelectric point | 6.16 |
Molecular weight | 235182.34 |
Publications | PubMed=29089032 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
The globular domain of the protein is located near the
polypeptide exit tunnel on the outside of the subunit, while an
extended beta-hairpin is found that lines the wall of the exit tunnel
in the center of the 70S ribosome.
This protein binds specifically to 23S rRNA.
ECO:0000256 RuleBase:RU364134 ECO:0000256 ARBA:ARBA00003478 ECO:0000256 ARBA:ARBA00003611 |
GO - Cellular Component | large ribosomal subunit GO:0015934 IEA:InterPro mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | structural constituent of ribosome GO:0003735 IEA:InterPro transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro translation GO:0006412 IEA:InterPro |
Binary Interactions |
Repeats | >MDP15843 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 103.57| 31| 33| 381| 412| 1 --------------------------------------------------------------------------- 381- 412 (57.01/39.34) WLQ.NWIGPSLSF.TSSFMHCFDYhSDAKVNSMD 415- 447 (46.56/26.38) WLDaNVIGSNRRYnSSSNSNCSSL.SSTSTSSSD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 260.16| 82| 363| 451| 534| 2 --------------------------------------------------------------------------- 451- 534 (135.46/65.97) KTSGTGD.....LEADADSLMCrQSGLSSLDR...SQNDNLKTGFKRSRTGISESFSQGGAVV...NPS.TSDYASMEVNNSAITGGNDQlGLQWG 810- 903 (124.69/54.75) KAGSSGQsiktvLATEVECLMC.QAFMCKIRHtllSSSGCLPVGMSRMSGSTSRNQSQGEAVVtgdNLSiKSEMKKKEIIPVRIAGDIDG.GLLDG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 87.25| 24| 39| 238| 262| 3 --------------------------------------------------------------------------- 238- 262 (41.28/27.45) ASNvSGEGLPVIVSPHGMRGRLTGC 280- 303 (45.97/26.53) ASN.GIVGLPCNVSQSGYQLKGQNC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 147.75| 44| 817| 756| 802| 4 --------------------------------------------------------------------------- 756- 802 (72.46/44.54) ESGKEKNDDKLSGyvrSCASRETQVAQSPFSGFNST..NSVKGIHNKTD 1551- 1596 (75.29/39.35) ESSKLLSDDGTSG...GDTGLNTQSETSEPDGFGSArqRSLPSLHCCYD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 355.25| 134| 817| 905| 1096| 5 --------------------------------------------------------------------------- 89- 146 (59.53/12.29) STWTNSFVGPWDPSQGLYNP.DEKIKLWLFLPGQHSSVVEKAQSAVSKlrvLASGLWVA............................................................................................................ 933- 1096 (189.84/209.84) SVQHNSFIEDSMLAYGLRQPlQELLDGMALLVQQATSLVDVALDADSN...DGSFGWLAlqeqwrrgfscrpsmvhagcggvLAscHSLDIAGVELidPLSADVPASFTLTLLQNDIKAALKSAFGTMEGpLSVVDWCKGRSQSNDGGISGdGFSAESTASASECRD 1836- 1914 (105.88/46.02) ..................................................................................LA..HLLHSKGCAI..PLSTGFVVSKAVPTMRRDARSISKEEWPSILS.VSLVDYYGGSNIIQEKFLKG.VVKTGGRGTGSEARD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 156.73| 48| 122| 547| 594| 6 --------------------------------------------------------------------------- 547- 594 (87.27/48.94) QALLSEFGDFGDFF....ENDALPFGEP..PGTAESQTLMIPASDSVDVGS...SPC 663- 719 (69.46/37.38) EALMSFAPEYGAVEtptgENSRLIFRNPyvPKSREVETANSSSNSYVYSATpplSPC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.25| 14| 25| 1462| 1475| 7 --------------------------------------------------------------------------- 1462- 1475 (31.23/16.60) PGMWKDCVGPRGIG 1490- 1503 (31.02/16.44) PGSWDNWQTSRGGG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 254.09| 82| 624| 1113| 1199| 8 --------------------------------------------------------------------------- 1113- 1199 (132.93/96.63) QSSAGGSSGLRDgiRVDEASERRLSQDTCLS...ESENL.LGSrlRPTLAAVPYPAILLGYQD.DWLKTSPSSlQIWEKAP...FEP...YAMPKNMT 1738- 1830 (121.16/73.32) QGIADNSRGLLQ..WVQSISFVSLSVDHSLQlmvQAESTsLGT..SQSSGIMSQPGYLEGYTPvKSLGSTPTS.YILIPSPnmrFLPpigLQLPTCLT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 34.52| 10| 25| 1507| 1516| 11 --------------------------------------------------------------------------- 1507- 1516 (19.93/11.33) EPNRI.RDFSF 1532- 1542 (14.59/ 6.07) EPGSLdRGLSF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.09| 11| 1891| 40| 50| 12 --------------------------------------------------------------------------- 40- 50 (23.17/15.81) LHQISWFQFLP 1930- 1940 (21.92/14.48) LHALSWMTVSP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) HKLIE 2) PIWNRKGK | 2146 2153 | 2150 2160 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab