<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15837

Description Pre-mRNA-processing protein 40C
SequenceMQSSRSQTSVMSSATGEPTTSSSTPNADSTQEVAQGKFIPPPGYSVGQASFSYMNASVPPGSSQQSSSSPVIPSTSGGSSAPLQPPIPGQSANVGSSFSYNISQTDNNFSSGLQFSASTLRPAAPDHSVHVKSVSPAASLQPPPPLVSTGLNSFIPGTAAAAGPLLSGSNLSFNGNPQMAQIDQPMKPLQNRGVDVAQETGGMTSATFVMQSITQAGHMNSGSPATAFPTSHMGSPNMRMPHAPQFLPAGVPRNPVTPGPPGLGPAIPPSSNLTATASPGGPSLPVRPNVPPVHPLANPPVQQQTYSPYLSPTPMAPAHQGPWLQPPPGTTMLRPPFPSYPVGFAVPFPLSATSAPLSSVTWPETRPPGVAPVAAPPGVPTTASQSTHALGLQPELPPGVDSGKHVNDADSKEGASTSEQLETWTAHRTETGAIYYYNSLTGESTYEKPAGFRGEPGKVAAQPTPVSWEKLAGTDWALVATNDGQKFYYNTKTKLSSWQIPGEVTELKKKHEADALQAQSPSTPNVNESTEKGSAPISLSIPAVNTGGRDATTLRPSIVPGSSALDLVKKKLTDSGAPPAVSSPAPASSGVISSELNGSKALESTIGAAQKENIKEKSKEANDNGSLSGSSSDSEDDEGVPTKEDCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARKTLFEHYVKTRADEERKEKRAAQKAAVEGFKQLLEEAKEDINEDTDYQSFKKKWGHDPRFETLDRKEREVLLNERVLQLRKAAQEKAHAVRAAAISQFKSMLREQGDITLNTRWSKVKDSLRNDPRYKSIKHEEREALFNEYLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREEQEVERVRLKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSELEKLFREHVKILYERCAQEFKALLAEVITVEACSRETDGKTVANSWSTAKQLLKGDPRYSKMARKDRESLWRRYVEDIQRRQKSSFDEGDKARSKGSSDSRRR
Length1030
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.712
Instability index53.53
Isoelectric point8.82
Molecular weight111598.46
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15837
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     531.15|      64|      65|     229|     292|       1
---------------------------------------------------------------------------
   18-   85 (55.41/15.28)	.....................PTT.....................SS.....STP.N...ADSTQ....EVAQGKFI.P....P....PGysvgqasfsyMNA.SVPPGSSQQSSSSPvipstsGG.........SSA..PLQP
   86-  142 (65.61/19.28)	PIPG.................QSA.....................NV.....GSSfSYNISQTDNNFSSGLQFSAST.......................LRP.AAPDHSVHVKSVSP......AA..........SL....QP
  143-  188 (44.72/11.09)	..PP........................................................P....LVSTGL..NSFI.P..GtA....AA..........AGP.LL.SGSNLSFNGNP......QM.........AQIdqPMKP
  229-  288 (105.79/35.03)	.....................PTS.....................HM.....GSP.NMRMPHAPQFLPAGVPRNPVT.P..G.P....PG..........LGP.AIPPSSNLTATASP......GG.........PSL..PVRP
  289-  344 (71.34/21.53)	NVPP...........................................vhplaNPP.VQQQTYSP.YLSP.TPMAPAH.Q..G......PW..........LQP...PPGTTML...RP......PF.........PSY..PVGF
  345-  394 (54.40/14.89)	AVP........................................................FPLSA....TSAPLSSVTwPetR.P....PG..........VAPvAAPP..GVPTTASQ......ST.........HAL..GLQP
  395-  502 (38.35/ 8.60)	ELPPgvdsgkhvndadskegaSTSeqletwtahrtetgaiyyynsLT.....GES.TYEKPAGFRGEPGKVAAQP.T.P..V.SweklAG..........TDW.A......LVATNDG......QKfyyntktklSSW..QIPG
  503-  556 (53.91/14.70)	EV.....................................................tELKKKHEADALQAQSPSTPNV.N..E.S....TE..........KGS.A.PISLSIPAVNTG......GR.........DAT..TLRP
  557-  602 (41.61/ 9.87)	SIVP................................................GSS.ALDL..........VKKKLTD.S..GaP....PA..........VSS.PAPASSGVISSELN......GS.........KAL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     434.13|      66|      66|     707|     772|       2
---------------------------------------------------------------------------
  608-  668 (56.96/26.14)	.AAQK...ENI.........KEKSKEANDNGSLSGSSSD.......SEDDEG....VPT.KEdciiqfKE.MLKERgV..APF.SKWEKE
  706-  772 (112.29/58.00)	RAAQKAAVEGFKQLLEE..AKEDINEDTDYQSFKKKWGH.......DPRFET....LDR.KE......REVLLNER.V..LQL.RKAAQE
  775-  839 (95.08/48.09)	HAVRAAAISQFKSMLRE...QGDITLNTRWSKVKDSLRN.......DPRYKS....IKH.EE......REALFNEY.L..SEL.KAAEQE
  842-  869 (35.22/13.63)	RIA........K.......AK.................H.......DEE........DKlKE......R.....ER.A..LRK.RKEREE
  878-  946 (81.55/40.30)	KARRKEAVESYQALLVE..IIKD..PQASWTESKPKLEK.......DPQGRAanphLDQ.SE......LEKLFREH.V..KILyERCAQE
  948- 1008 (53.04/23.89)	KA...........LLAEviTVEACSRETDGKTVANSWSTakqllkgDPRYSK....MAR.KD......RESLWRRY.VedIQR.R.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.96|      10|     208|       6|      15|       3
---------------------------------------------------------------------------
    6-   15 (16.64/ 7.18)	SQTSVMSSAT
  214-  223 (17.32/ 7.74)	TQAGHMNSGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15837 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APLSSVTWPETRPPGVAPVAAPPGVPTTASQSTHALGLQPELPPGVDSGKHVNDADSKEGASTSEQLETWT
2) ASFSYMNASVPPGSSQQSSSSPVIPSTSGGSSAPLQPPIPGQSANVGSSFSYN
3) IPGEVTELKKKHEADALQAQSPSTPNVNESTEKGSAPISLSIPAVNTGGRDATTLRPSIVP
4) LDLVKKKLTDSGAPPAVSSPAPASSGVISSEL
5) LLSGSNLSFNGNPQMAQIDQPMKPLQNRGVDVAQETGGMTSATFVMQSITQAGHMNSGSPATAFPTSHMGSPNMRMPHAPQFLPAGVPRNPVTPGPPGLGPAIPPSSNLTATASPGGPSLPVRPNVPPVHPLANPPVQQQTYSPYLSPTPMAPAHQGPWLQPPPGTTMLRPPFP
6) MQSSRSQTSVMSSATGEPTTSSSTPNADSTQEVAQGKFIPP
7) SGLQFSASTLRPAAPDHSVHVKSVSPAASLQPPPPLVSTGLNSF
8) SKALESTIGAAQKENIKEKSKEANDNGSLSGSSSDSEDDEGVPTKEDC
355
49
500
565
165
1
111
599
425
101
560
596
338
41
154
646










Molecular Recognition Features






MoRF SequenceStartStop




1) LWRRYV
997
1002