<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15829

Description Uncharacterized protein
SequenceMSGEEVMIKAEGICDLENTVFVAVGKNVKEGKSVLSWALKSFAGRRICVLHVHQPNHLFSSKDGKLSGAKLKQHMVKACQELDRLRLHKLLNQYLLFISQAGIQGSKVWLEIDNVEKGIIHIIEERKIQWLVMGAAAETHYSKQLSELKSSKAKFVCQHAHMHCHIWFTCSGYLIHTRSMDNALLSRMESLSSPEDKGGIKIRNHVDDGYEDLNILEDPSKPGSKVVKVEIKGDYSRLHSRNKHDVHLHHATSQPLLEEGSFHRKASSVERSRLEHAMMDAENSKQRAFEESVKRWRAEEDAMEAIRMAEVSYKLSKEKEDQRREQEENLAKQKEEIEGLKIQHDLYLKELQKIQEKKLVLESQITESSYAGKELEEKILQAVELLISFRKQRDEMQVERDNAIKEVNRFRKLAQDDADEYCIQNFFSISFSDIIEATQNFDPSSKIGEGKLGSVYKGIIHHIKVAIKMLPDFGSLSDSDFQNKAERLSRVRHPNLVTLMGICSESRSLAYEFLENGNLEDHLACREKSRPLHWHHRIRIAVEICSALIFVHANDPCIGHGNLRPTNVLLDAKFVSKISDFGVHLLISQNENSNYDDLEASIYVDPECIDKGPVTVESDVYSFGVILLRLLTARPASGIVKDVKCALESGNLGSVLDSSAGDWPIDQAELLAYLALRCCEKDPLNRPNMLSEVWPTIEPMRDICTPHSDLNTSSHSSKSQKRIPPHFVCPIFQDVMEDPHIAADGYTYEGDAIKGWLYSGHNTSPMTNLKLDSCDLIPNYALYRAIQEWQQQS
Length793
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.453
Instability index43.12
Isoelectric point6.11
Molecular weight90081.51
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15829
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.44|      29|     148|      62|     111|       5
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   29-   59 (51.33/27.57)	KEGKsvLSWA.LKSF...AGRRICVLHVHQ.PNH..LF
   62-   97 (34.12/70.11)	KDGK..LSGAkLKQHmvkACQELDRLRLHKlLNQylLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.39|      22|      26|     247|     271|       7
---------------------------------------------------------------------------
  247-  271 (34.97/29.38)	HLHHATSQPlleEGSFHRK.ASSVER
  273-  295 (33.41/20.07)	RLEHAMMDA...ENSKQRAfEESVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.88|      23|      26|     191|     213|       8
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  191-  213 (39.22/22.53)	LSSPEDKGGIKIRNHVDDGYEDL
  216-  238 (37.66/21.37)	LEDPSKPGSKVVKVEIKGDYSRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.63|      43|     199|     483|     534|       9
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  483-  534 (65.27/63.79)	NKAERLSRVrHPNLVTLMGICSESRSLayeflengNLEDHLACREKSRPLHW
  685-  727 (81.36/54.12)	NRPNMLSEV.WPTIEPMRDICTPHSDL........NTSSHSSKSQKRIPPHF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15829 with Med32 domain of Kingdom Viridiplantae
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