<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15828

Description U-box domain-containing protein 35
SequenceMEEKDEAVTKVEGLSALPPLNSSTIAVAINGKKKSKHVVRWALDKFVPEGKVCFKLLHVRPRITGVPTPMGNFIPISQVRDDVVAAFRKDVELQTSGNLLPYKMLCTNRKVQVEVLQLESDDIVKAIAQEVTKHNIIKLVIGASSRSIFSRGQSLSSRISDGTPSFCTIYAVSKGKLSSIRPDSKINGTSLAGDSYTSCSITSSTGHTSSSLTERSEPDSSSSYSHFHSPSLPMQRFRALSLINQNFPHRRASSNVPVHHKKYSLDFDDGEDDASSCPQGTFLTDGDDLASSFRSLVTNNYTTADDQASISGAPTNSSSRFEADINFELEKLRTELRHTRGMYAVAQTEVIEASRKINELQKRRLEEDIKLREICLKEEEVKELARKENEKYEAAKKEADYVKDCAEREAAQRKEAELLALREAKEKEKLEHALMGQAHQYQEFTWEEIVSSTSSFSENLKIGMGAYGTVYKCSLHHTTVAVKVLHSEGSHLTKQYQRELEILSKISHPHLLILLGVCPDRGCLVYEFMENGSLEERLLRKHDTPPIPWFDRYRIAWEVASALAFLHSSKPDPIIHRDLKPANILLDRNFVSKIGDVGLSTMINSDAMLSTIYKDTGPVGTLCYIDPEYQRTGLISPISDIYAFGMVLLQLLTAKAAMGLPHIVETATDNDNLTKVLDPEAGKWPLEETKELAILALKCTELCRRDRPDLKDEILPALEKLKEVADKARDSASPAQPPPPNYYLCPLLKSIMEEPCVAADGYTYDRKAIETWIKENNVSPMTNLPLAHKNLLPNYALLSAILDWKSR
Length807
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.393
Instability index39.71
Isoelectric point6.26
Molecular weight90149.63
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15828
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      19|      35|     377|     395|       1
---------------------------------------------------------------------------
  377-  395 (31.85/17.69)	KEEEVKELAR.KENEKYEAA
  414-  433 (25.09/12.62)	KEAELLALREaKEKEKLEHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.40|      27|     320|     228|     261|       2
---------------------------------------------------------------------------
  228-  261 (46.12/39.25)	H.SPSLP.MQRFR.......ALSLINQNFPHrrassnvPVHHK
  542-  577 (37.27/19.69)	HdTPPIPwFDRYRiawevasALAFLHSSKPD.......PIIHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.24|      10|      29|     325|     335|       5
---------------------------------------------------------------------------
  325-  335 (13.23/15.19)	INfELEKLRTE
  357-  366 (18.00/12.90)	IN.ELQKRRLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.50|      47|     184|     483|     536|       6
---------------------------------------------------------------------------
  483-  536 (75.26/58.80)	KVLHSEGSHLTKQYQRELEILSkishphlLILLGVC.PDRGCLVYEFMEN.GSLEE
  675-  723 (72.24/42.52)	KVLDPEAGKWPLEETKELAILA.......LKCTELCrRDRPDLKDEILPAlEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.13|      35|     186|     578|     612|       7
---------------------------------------------------------------------------
  578-  612 (57.24/38.20)	DLKPANILLDRNFVSKIGDVGLS..TMINSDAMLSTI
  765-  801 (53.89/35.53)	DRKAIETWIKENNVSPMTNLPLAhkNLLPNYALLSAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15828 with Med32 domain of Kingdom Viridiplantae
Unable to open file!