<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15820

Description Uncharacterized protein
SequenceMLRVPTPSSVSNSAEMEQHNTQQAQPQLRSPSRTHHQFHPSRPAILDLFNLYLGLKNSGQKSDDSIREPPKRKEKKREEKRRKSYDWLEIYRNKTQKRVTALNRELPPRNEQFLLDFGQLQSQFTDQEQLSTVAESVLIYLIIHCSSHVPRAEFILFAIRSLSSIGCINWDTFLPSLLSSVSSTEISASQGNQPSGAVSCANLTSGLLPSSTTVASTTIFQSSNPASPLPTVHGIGSPVHSAAEPSSSAVLSPMNSSDVNATSQQSIAKVNLLTRDSATSSLRQLCCKIILTGLDSNIKPVTHGEVFQHMLNWLINWDQNLHGVDDFDSVKYWKPDKALTEWLHSCLDVIWLLVESDKCRIPFYELLRSGLQFLENIPDDEALFTLILEIHRRRDMMAMHMQMLDQQLHCPTFGTPRLLPQGTANSSGEGVANMRSSPITYSSVLGEPLHGECIYLVVYVDDIVITDNDQDGIEVAQSRSCIVISQCKYTLDILEETGMMGCRPIETHMDSNAKLVPGTGATQ
Length523
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.298
Instability index61.70
Isoelectric point5.87
Molecular weight58260.41
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15820
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     169.06|      43|     145|     168|     210|       1
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  168-  210 (74.57/46.53)	INWDTFLPSLLSSVSSTEI.SASQGNQPSGAV.....S..CAN..................LTSGLLPS
  214-  246 (26.56/11.79)	.............VASTTIfQSSNPASPLPTV.....HgiGSP..................VHSAAEPS
  249-  280 (31.90/15.66)	........AVLSPMNSSDV.NAT..SQQS..I.....A..KVN.................lLTRDSATS
  315-  371 (36.04/18.65)	INWDQNLHGV......DDF.DSVKYWKPDKALtewlhS..CLDviwllvesdkcripfyelLRSGL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.13|      31|      36|      42|      75|       4
---------------------------------------------------------------------------
   42-   75 (47.78/43.46)	RPAILDLFNLYlglKNSGQKSDDSI.REPPKRKEK
   81-  112 (50.35/36.48)	RRKSYDWLEIY...RNKTQKRVTALnRELPPRNEQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15820 with Med23 domain of Kingdom Viridiplantae
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