<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15819

Description Uncharacterized protein
SequenceMMIQMTFLGNFVSCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQPPPPQQLQAQHPQLQQQQQHLSQLQQQPLQQMQQQQQQPLMQLQQQQQIPLQQSQVPQMQQQHIHQLQQQQQQIPQIQQPQQQQPMVGTGMNQAYLQGPARSQLMTQGQAPAERSTCAPSSQIKVAVKVWACGHRYLSSYTAPVGARSYVWPGVCPDPGYVTYILEAL
Length227
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.05
Grand average of hydropathy-0.535
Instability index85.73
Isoelectric point8.91
Molecular weight25664.20
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15819
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.00|      20|      30|       2|      22|       3
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    2-   22 (34.11/25.28)	MIQMTFLGNFVSCAvIQLPSQ
   35-   54 (38.88/24.36)	LIGMLFPGDMVVFK.PQIPSQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.94|      18|      62|      56|      73|       4
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   56-   73 (38.01/11.79)	QQQQPPPPQQLQAQHPQL
  119-  136 (34.93/10.12)	QQQHIHQLQQQQQQIPQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.98|      10|      30|     169|     178|       5
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  169-  178 (19.86/14.00)	AP.AERSTCAP
  201-  211 (17.12/11.18)	APvGARSYVWP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15819 with Med25 domain of Kingdom Viridiplantae
Unable to open file!