<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15811

Description Uncharacterized protein
SequenceMHAHRFRETGTYAGLRIPGDQRHITSALPGHLVDVLAVADGPQSFTDSSGTYLKNTPPFSSSNVNSQGALLQKRSLDTKVSGVPCDQGVTGFGHVWASCENAKASGALRAAASPSGTTSFDTTTASPLQHVNSPRSSANMMNTPSPQQQTHQQQQQQQQQQQQQQLQQLQQRQKMMQLPQHQQQLLAQQQLRQASIPGLGQLHGQPQMQFSQPLGAQQFQGRQLASGALHHGMGQSQLNQGNQLNRHLNQFSSPMNTALFNSAQSTPTSQMISNMSAMMPSQTLLPRMQIGMSGGTRNLAAANLSDQMFNMGGNNPGMMSIQQQQQQQQQHGTFANMSQNTQNLQQGMMPLQNTAQQTHPSFQQQRPQGQQ
Length371
PositionHead
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.04
Grand average of hydropathy-0.818
Instability index69.01
Isoelectric point10.58
Molecular weight40522.62
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15811
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     183.42|      26|      27|     179|     204|       1
---------------------------------------------------------------------------
  148-  163 (33.50/ 6.95)	QQTH..........QQQ.Q......................QQQQ.QQQQ
  164-  182 (39.06/ 9.28)	QQL...........QQL.QQR........Q.K.......MMQL...PQHQ
  183-  209 (44.15/11.42)	QQLL..........AQQ.QLR........Q.AS...IPGLGQLHGqPQMQ
  212-  242 (33.38/ 6.90)	QPLG..........AQQfQGR........QlASgalHHGMGQSQL.NQGN
  328-  370 (33.34/ 6.89)	QQQHgtfanmsqntQNL.QQGmmplqntaQ.QT...HPSF.QQQR.PQGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.05|      17|      18|      98|     114|       2
---------------------------------------------------------------------------
   60-   84 (18.91/ 9.10)	SSSNVNSQGALlqkrsldtKVSGVP
   98-  114 (28.38/17.35)	SCENAKASGAL........RAAASP
  119-  134 (26.75/15.94)	SFDTTTAS.PL........QHVNSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.06|      12|      17|     250|     262|       3
---------------------------------------------------------------------------
  250-  262 (17.87/13.26)	QFSSPMnTALFNS
  270-  281 (23.19/12.42)	QMISNM.SAMMPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15811 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KASGALRAAASPSGTTSFDTTTASPLQHVNSPRSSANMMNTPSPQQQTHQQQQQQQQQQQQQQLQQLQQRQKMMQLPQHQQQLLAQQQLRQASIPGLGQLHGQPQMQFSQPLGAQQFQGRQLASGALHHGMGQSQLNQGNQLNRHLNQFSSPMNTALFNSAQSTPTSQMISNMSAMMPSQTLLPRMQIGMSGGTRNLAAANLSDQMFNMGGNNPGMMSIQQQQQQQQQHGTFANMSQNTQNLQQGMMPLQNTAQQTHPSFQQQRPQGQQ
2) TDSSGTYLKNTPPFSSSNVNSQGALLQKRSLDTKVSGVP
103
46
371
84










Molecular Recognition Features






MoRF SequenceStartStop




NANANA