<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15802

Description Mediator of RNA polymerase II transcription subunit 33B
SequenceMETATVNSIQYDRVKELTKLAQERNIDPLIWSMQLSSMLSSAGISLPSIEVGEILVSHICWCNNVPNAWKLLEKALMVRIVPPLFVLALLSTRVIPARRSYPMGYRLYMELLKRYAFSLPSLVNGPNYRKIMESINDTLHLSRIFELQGSESGKHVIEYVFTVVWQLLDASLDDEGLLALTVEKKSMWPVATQEMEISNRDDLAGKRVEHREGLCRMNTVLAIEIIGELFGDKLTSMILYLARRNMPTHWDSFMQHLQLLVSNSSALRNSKIICPEALILLISKNRGVRSRECITSSRKFLHAVMASGSLVFSASRGDDASASVLWLPIDLFLEDTMDGTQVAATSAADTLAGLVKALQAVNFTSWRNTFFGLWISALRLVNRERDPSEGPVPRLDTCLCLLLSITPLAITNIIKEGENEGSSSDQRTEATGERRQALVSSLQQLYDYEGLLNPPLPAIPLANQATLKAMMFLSGISGGNEYFDGMRLNDIPVNCAGNLWHLIVEACIARNILDTSAYLWPGYVKGQCNQVPCNMSGPSPSWSSLMKGSLLTPPMVSVLVSTPASSLAEIEKIYEIAVNGPAEDKISAATILCGASLARGWNIQEHTILFIIRLLSPCVPSDYCGTDSHLIGYAPFLNVLLVGISSVDCIQIFSLHGLVPQLVGALIPICEAFGSCPPNVSWTLMSEEITSHAVFSNAFTLLLTLFRFDQPPLEHLTRDVPMGSHLTPEFLLLVRNSQLVFSEDLLKDQSKSKQLSRVLSQLPREPIVMDSFPKLKYWYRQHQACIASPLSGLVPGSPVHQIAEALLNFMFRKINKAGQSLKPPTSSGSNSSGSGNEEISPHLKLPAWDILEAVPFVLNAALTACAHGALSPRELATGLKDLADFLPASLATITSYFSAEVSRGIWNPASMNGTDWPSPAANLATVEQQIKKILAATGVDVPSLSVGGSSPAVLPLPLAILVSLTITYKLDRDTDRFLNFIGAAVSNLATSCPWPCMPVMASLWAQKVRRWSDFLVFSASRTVFHHSRDAVVQLLRACFTATLGLDTSSTESNGRVGSLLGHGFGSHFSGGMSAVAPGILYLRVHRAVRNVMSMGEEIVSLLMHFVRDIADNGVTARELEKLKKTRSEISSSGFPASCQVSLAAAMKRAKLASSLGASLIWITGGLSLVQSLLKETLPSWFISAHGSEPNGGISEGMVARLRGYSLAHLAVISGTFVWGVDSLSSTSKWRPSILGAHMEFLASALDGKISLGCNKATWRAYVSGFISLILGCAPRWLLEVDLEVLKRLSKGLKRWDEEALALALLENSGVGAMGTAAEMILEGGLSFAR
Length1329
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.176
Instability index43.80
Isoelectric point6.73
Molecular weight144748.96
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15802
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.27|      28|      93|     608|     645|       1
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   84-  112 (46.24/17.66)	LFVLALLSTRViPA....RRSYPMGYRLYMELL
  609-  640 (46.03/33.13)	LFIIRLLSPCV.PSdycgTDSHLIGYAPFLNVL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.42|      32|      93|    1178|    1219|       2
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  365-  409 (43.42/18.54)	SWrntffglWISAlRLVNRERDPSEGPVPRLDTclcllLSITPLA
 1179- 1210 (60.00/47.55)	SW.......FISA.HGSEPNGGISEGMVARLRG.....YSLAHLA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.82|      70|      95|    1002|    1075|       3
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 1002- 1075 (111.04/89.83)	SLWAQKVRRWSDFLVFSASRTVFHHSRDAVVQllrACFTATLGLDTSSTESNGRVGSLLGHGFgSHFSGGMSAV
 1100- 1169 (112.78/78.27)	SLLMHFVRDIADNGVTARELEKLKKTRSEISS...SGFPASCQVSLAAAMKRAKLASSLGASL.IWITGGLSLV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     155.76|      54|     169|     300|     356|       4
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  300-  328 (38.23/13.76)	...............................F................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LHAVMASGSLVFSA..SRGDDASASVLWLP
  329-  356 (18.26/ 9.03)	IDLFLEDTMDGTQVAA...tsaADTLAGLVK...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  821-  846 (29.66/ 9.12)	................................alqavnftswrntffglwisalrlvnrerdpsegpvprldtclclllsitplaitniikegenegsssdqrteatgerrqalvsslqqlydyegllnpplpaiplanqatlkammflsgisggneyfdgmrlndipvncagnlwhliveaciarnildtsaylwpgyvkgqcnqvpcnmsgpspswsslmkgslltppmvsvlvstpasslaeiekiyeiavngpaedkisaatilcgaslargwniqehtilfiirllspcvpsdycgtdshligyapflnvllvgissvdciqifslhglvpqlvgalipiceafgscppnvswtlmseeitshavfsnaftllltlfrfdqpplehltrdvpmgshltpeflllvrnsqlvfsedllkdqskskqlsrvlsqlprepivmdsfpklkywyrqhqaciasplsglvpgspvhqiaeallnfmfrkinkagqsLKPPTSSGS..NSS..GSGNEEISPHLKLP
  854-  908 (69.61/31.39)	VPFVLNAALTACAHGAlsprelATGLKDLADF................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LPASLATITSYFSAevSRG.......IWNP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     220.97|      72|     465|     213|     291|       5
---------------------------------------------------------------------------
  213-  291 (109.64/89.26)	GLCRMN...TVLAIEIIGE.LFGDKLTsMILYLARRNMPThwdsfMQHLQLLVSNSSAL........RNSKIICPEALILLISKNRGVrSR
  674-  757 (111.33/69.28)	GSCPPNvswTLMSEEITSHaVFSNAFT.LLLTLFRFDQPP.....LEHLTRDVPMGSHLtpeflllvRNSQLVFSEDLLKDQSKSKQL.SR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.86|      20|     167|     784|     810|       6
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  759-  778 (37.45/24.96)	LSQL.PREPIVMDSFPKLKYW
  790-  810 (30.41/14.90)	LSGLvPGSPVHQIAEALLNFM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.78|      52|     429|      28|      79|       7
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   28-   79 (91.23/60.60)	PLIWSMQLSSMLSSAGIS.....LPSIE.VGEILVS.....HI....CWCN.NVPNAWKLLEKALMVR
  460-  510 (69.76/44.38)	PLANQATLKAMMFLSGISggneyFDGMR.LNDIPV...............N.CAGNLWHLIVEACIAR
  549-  608 (49.79/29.30)	SLLTPPMVSVLVSTPASS.....LAEIEkIYEIAVNgpaedKIsaatILCGaSLARGWNIQEHTI...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15802 with Med33 domain of Kingdom Viridiplantae
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