<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15796

Description Uncharacterized protein
SequenceMEGVIVSLISWLQTHFSCSSPGQFGGIYRAVNSAGGSMSKDKLPKVNWTQHAAAHDNFSCQDKFLSSNILFSLPTQRPCAREEINARSMACQIRSVTKLEAEKAWKLLTSLKLSPKSYTKPGKTLPLTKDTNTFSQHSHHTQIPRASDGNSAPARCRPVHRGVGENGENTDSTRFAGNCFPPNSSGVAESGNFVNRQSGVDTSVANISHARGIGDVSSSHAIGVSKTRESHSTCAEGTEEDDILLNIDVDQIVEHYQTNCTPRHSVSRFPSTTPVTNSQSLRGPGEKNLPPELSINCNHGLKLGHCPGALDHLQEMKDKLIEISNDLLDNVSELSSEQVEMLRQERSQLKQQIQHLEKFLQTVSGNEERKMSQCSASPLTSAFQHETPSAFQYETPSSFPSRINPTRLDTQFSGYNEPSHFDNWNSSSLSFDVTGGYGPSTAPVEREPYIPKYLEVNYIDGSNDKKWSSRDFPWTKKLEANNKKVFGNHSFRPNQREVINATISGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQVNIPAAYLSSNMEWTEQQEILRELNSDGCKYKFLFVTPEKVAKSDVLLRHLESLHARESLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPTVPVLALTATATLSVKEDVVQALGLANCIIFRQSFNRPNLRYTIVPKTKKCLEDIGNFIQDNHFDQCGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGSMDGAQRANIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLPSSCVLYYSYSDYIRVKHMISQGTVEQSPFGSGYGRSNVAASGRILETNMENLLRMAFFQHFFQVSYCENDVDCRRLLQLIHFGEKFESTNCRKTCDNCCKTQSCIEKDVTEVAKQLVELVKMTGQKFSSAHVLEVYRGSLSQYVKKHRHESLRLHGAGKHLAKGEASRVLRHLVTEDILVEDVKKSDLYGSVSSVLKVNESKAYNLFASGQTVRLRFPSSVKASKLGKSEATPAKGSLTSGKQSPPRADPSSVPQPPFDPVLSAKLYTALRKLRAVIIKEAGEGVMAHHIYGDISLQEIGRKVPRTIDELLDINGIGKVKITKYGDRVLETIEATIRAHNKSAKMSSSGNDTTDSGKKRRNSINVRNGISKDEDYFTENTGCTKKRVLKKHAEVIDYSDPRYFDEFMDGDIDFDENMMPQRTLPISKVDQNGRRIS
Length1243
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.497
Instability index44.53
Isoelectric point8.47
Molecular weight138533.01
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15796
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.62|      56|      62|     916|     973|       1
---------------------------------------------------------------------------
  916-  973 (89.24/66.50)	VTEvaKQLVELVKMTGQKFSSAHVLEVYRGSLSQYVKKHRHESLRLHGAGK..HLAKGEA
  981- 1038 (85.38/57.57)	VTE..DILVEDVKKSDLYGSVSSVLKVNESKAYNLFASGQTVRLRFPSSVKasKLGKSEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     443.80|     136|     412|      11|     175|       2
---------------------------------------------------------------------------
   22-  160 (223.49/159.00)	GQFGGIYRAVNSAGGSMSKDK.LPKVNwTQHAAA.....HDNFSCQDKFLSSNILFSLPTQRPCAREEINaRSMA.CQ...IR.SVTKLEAEKAWKLLTSLKLSPKSYTKPG.KTLP..LTKDT..NTFSQHSHHTQIPRAS...D..GNSAPARCrPVH
  191-  311 (155.74/104.50)	GNFVNRQSGVDTSVANISHARgIGDVS.SSHAIGvsktrESHSTCAEGTEEDDILLNIDVDQIVEHYQTN......CT...PRhSVSRFPS.......TTPVTNSQSLRGPGeKNLPpeLSINC..NHGLKLGH...CPGAL...D..............
  369-  445 (64.57/26.37)	.......................................................................RKMSqCSaspLT.SAFQHETPSAFQYET.....PSSF..PS.RINP..TRLDTqfSGYNEPSHFDNWNSSSlsfDvtGGYGPSTA.PVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     304.88|     100|     418|     627|     760|       3
---------------------------------------------------------------------------
  627-  735 (155.25/109.54)	GHDFRPDYQGLGilKQKFPTVPVLALTATATLSVKEDVVQalGLANCIIFRQSFNRPNLRYTI...VPKTKKCLE.DIGN.....FIQdnHFDQcgIIYCLSRMDCEKVAeKLQEYGH
  770-  790 (-12.83/23.60)	.................................................FGMGINKPDVRFVIhhsLPKS................................................
  791-  891 (162.46/87.98)	IEGYHQECGRAG..RDGLPSSCVLYYSYSDYIRVKHMISQ..GTVEQSPFGSGYGRSN........VAASGRILEtNMENllrmaFFQ..HFFQ..VSYCENDVDCRRLL.QLIHFGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.91|      23|     282|     839|     861|       4
---------------------------------------------------------------------------
  839-  861 (38.36/26.73)	GYGRSNVAASG.RILETNMENLLR
 1098- 1119 (29.39/18.63)	.YGDISLQEIG.RKVPRTIDELLD
 1122- 1144 (30.16/19.32)	GIGKVKITKYGdRVLET.IEATIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.16|      33|     754|     451|     485|       6
---------------------------------------------------------------------------
  451-  485 (50.01/38.00)	PKYLEvNYIDGSND...KKWSSRDFPwTKKLEANNKKV
 1207- 1242 (56.16/32.47)	PRYFD.EFMDGDIDfdeNMMPQRTLP.ISKVDQNGRRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15796 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GVAESGNFVNRQSGVDTSVANISHARGIGDVSSSHAIGVSKTRESHSTCAEGTEE
2) KSEATPAKGSLTSGKQSPPRADPSSVPQPP
3) NCTPRHSVSRFPSTTPVTNSQSLRGPGEKNLPPELS
4) TKPGKTLPLTKDTNTFSQHSHHTQIPRASDGNSAPARCRPVHRGVGENGENTDSTRFAGNCFPP
186
1035
259
119
240
1064
294
182










Molecular Recognition Features






MoRF SequenceStartStop




NANANA