<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15794

Description U-box domain-containing protein 33
SequenceMAMETPSPRVRRSPVRYPEVDLSLLNLTEQIVQEGSSPLTPVRVVDDVMYVAVGKDLKETEPTLTWALHKSGGRKICILHVHTPAQKIPMMGTKFNIDQLDVHQVMTYHEKERQEMHKILEKYVLICGRAGVRADKLVLEMDSIENGIVELISQHGIGKLVMGAAANKCYSKKMTDLRSKKAIYVRLQAPAFCCIWFVCKGNLIYTRESKSERLFAESVSPSIPASPVNDIVLRSSSVTEGYNEQVQLRGPCTDYHRVASDNQRIIFSGFSPGGTLQANFPSMSSDRSADSWDGIPPISPSVASRLSLSSSVEMANDSLARTEGNETAFDSSALHYFNFGPRQSSPPSIAERVNDELAGSMNDELYDKFEQYVAEAETARREAFEESIKRRKAEKDAIEARRRAKASETVYADELRRRRELEEALAKDKEKADQMKSQLNKLREDLQEAQAQTSSLEGQLLNSDTQVQELEQKIFSAVDLLQKYRKERDELQVERDDALKLAEALREKHSDGSSFKSTSVLFAEFYFHEIEEATRNFDPALKIGEGGYGSIYRGLLRHTQVAIKMLHPHSLQGPSEFQQEVNILSKLRHPNIVTLIGACPEAWTLVYEYLPNGSLEDRLTCKDNTPPLSWQTRIRVATELCCALIFLHSCTARGIIHGDLKPANILLDANFVSKLSDFGICRVLSEDDFSENSTTLCYRTDPKGTFAYMDPEFLETGELTPKSDVYSFGIILLRLLTGRPALGIKNEIQYALDKGNLKNLLDPTAGDWPFVQAKQLAHLAMSCCEKNRRCRPDLPSEVWKVLEPMRASCGASSLKMGSDEPCDIPSYFICPIFQEVMQDPVVAADGFTYEAEALRGWLDSGHETSPMTNLTLSHKNLVPNHALRSAIQEWLQQS
Length894
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy-0.405
Instability index52.53
Isoelectric point5.69
Molecular weight100338.83
Publications
PubMed=29089032

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15794
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.10|      23|      24|     403|     426|       1
---------------------------------------------------------------------------
  373-  389 (17.14/ 8.54)	.......VAEAETARREA.FEESIK
  403-  426 (32.08/30.30)	RAKASEtVYADELRRRRE.LEEALA
  429-  451 (28.87/20.85)	KEKADQ..MKSQLNKLREdLQEAQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.86|      22|      24|     115|     138|       2
---------------------------------------------------------------------------
  115-  138 (33.49/32.25)	EMHKILEKYVLICGRAGVraDKLV
  140-  161 (37.37/28.15)	EMDSIENGIVELISQHGI..GKLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.08|      23|      24|     269|     291|       3
---------------------------------------------------------------------------
  269-  291 (41.94/26.54)	GFSPGGTLQANFPSMSS..DRSADS
  294-  318 (35.14/21.03)	GIPPISPSVASRLSLSSsvEMANDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.68|      26|     123|     217|     244|       4
---------------------------------------------------------------------------
  217-  244 (36.60/35.39)	ESVSPSIpASPVNDiVLRSSSVTEGYNE
  343-  368 (47.07/33.13)	QSSPPSI.AERVND.ELAGSMNDELYDK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15794 with Med32 domain of Kingdom Viridiplantae
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