<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15786

Description Mediator of RNA polymerase II transcription subunit 33B (Fragment)
SequenceMVSVQQQQSPLLNGVIELTKSAQLKNADPLSWAIQLSSILSTGGLSLPSTDVAELLVSYICWENNVGIAWKFLEKAAALRIVPPLFLLSLLSNRVIPKRRSYPVAYRLYMELLKIYVFSLPSLINGPNYQKIMEAIDDTLHLSQIFGLQGSESGLIVVEFVFTIVWKLLDASLGDEGLLDLTTEKRSRWPITSSQDVGLNNHYAFAGGRTEKHEVLCKTNTVMSIEIIGEFFQDKVTSAILYLARRNMPTHWESFTQNLRLLVANSSALRNSKNISPEALVQLTSDKRVVLSRKYKTISHKRFHAVMASGSLVSSADQYHGASPAVLWLPIDLFLEDTMDGSQVAATSAVETLAGLVKALHEVNSSSWQDTFLGLWFAALRLVNRERDSSEGPVPRLDTCLCVLLSITPLAIVNLLEEEEMSCSSANQRKESSTKRHQDLIHSLQQLGDYESLLTPPLPAAPLANLAAAKAMMLHSGLSVGSGYFEGMNLNDMPVNCVGNLRHLIVEACIARNILDTSAYLWPGYVKGRCNQVPRSVSTQMPGWSSLMKGSTLTPPLVSSLVSTPASSLAEIKKIYEIAVNGSDDEKISAATVLCGASLARGWNIQEHTVLFITRLLSPPVPANYSGTESHLIGYARFLNVLLVGVSSVDCVQIFSLHGLVPQLAGALMPICEVFGSCAPNVKWIVMSEEISSHAVFSNAFTLLLKLWRFDQPPLEHLMDAPMGAHPTPEYLLLVRNSQLTSSDDLQKDQSKIKRLTRLSSPLSGEPIFLDSFPKLTLWYRQHQACIASPLSELVPGTPVHQIVEALLNFMFKKINRTGQSLTTTTSGSSSSSGPGNEDVSLHLKLPAWDILEAVPFVLDAALTACAHGSLSPRELVTGLKDLADFLPGSLATIVSYFSAEVSRGIWKLASMNGTDWPSPAANLATVEQQIKKILAATGVNVPSLTIGGNSPATLLLPLAALVSLTITYKLDKSTDRFLNLIGPALSNLATGCPWPCMPVMVALWAQKVKRWSDFLVFSASRTVFHHNRDAVVQLLRMCFAATLGLTTSSIASKGGVGALLGHGFGSHLSGGISPVAPGMLYLRVHRAVPNVMFMTEEVVSLLMHSVRDIASSGLSAENLEKLKKSKCGMTYGQVSLAAVLSRVKLAASLGASLVWITGGVGLVQSLIKETLPSWFLSTHGMEPSGGMSGGIVARLGGYALAYIAVLSGTFAWG
Length1214
PositionTail
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.07
Grand average of hydropathy0.202
Instability index45.73
Isoelectric point7.81
Molecular weight131416.64
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15786
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     553.68|     149|     245|     819|     969|       1
---------------------------------------------------------------------------
  819-  969 (238.75/169.11)	GQSLTTTTSGSSSSSGPGNEDVSL.HLKLPA.WDILEAVPFVLDAALTACAHGSLSPRELVTGLKDLADFLPGSLATIVSYFSAEVSRGiwKLASMNGTDWPSPAANLATVEQQIKK.....ILAAT.GVNVPSLTIGGNSPATL.LLPLAALVSLTITY
  983- 1061 (110.49/69.93)	GPALSNLATGCPWPCMPVM..VALwAQKVKR.W..................................SDFLVFSASRTVFHH........................NRDAVVQLLRM.....CFAATlGLTTSSIASKGGVGALL...............
 1066- 1211 (204.43/137.22)	....GSHLSGGISPVAPGMLYLRV.HRAVPNvMFMTEEVVSLLMHSVRDIASSGLSAENLEKLKKSKCGMTYGQVS.....LAAVLSRV..KLAASLGASLVWITGGVGLVQSLIKEtlpswFLSTH.GME.PSGGMSGGIVARLgGYALAYIAVLSGTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     344.75|      97|     101|     566|     666|       3
---------------------------------------------------------------------------
  313-  360 (51.83/24.08)	.......................VSSADQYHGA..SPAVLWLPID...LFLEDTMDGSQVAATSAVET.LAGLVKAL.............................
  569-  666 (157.64/97.67)	LAEIKKIY.EIAVNGS...DDEKISAATVLCGA..SLARGWNIQEHTvLFITRLLSPPVPANYSGTESHLIGYARFLNVLLVGVSSV..DCVQIFSLHGLVPQLAG
  668-  765 (135.27/73.75)	LMPICEVFgSCAPNVKwivMSEEISSHAVFSNAftLLLKLWRFDQPP...LEHLMDAPMGAH..PTPEYLL.LVR..NSQLTSSDDLqkDQSKIKRLTRLSSPLSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.61|      33|     101|     173|     208|       4
---------------------------------------------------------------------------
  173-  208 (55.28/44.00)	LGDEGLLDLTTEKR...SRWPITSSQDvglNNHYAFAGG
  275-  310 (52.33/33.56)	ISPEALVQLTSDKRvvlSRKYKTISHK...RFHAVMASG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.46|      12|     101|     443|     458|       6
---------------------------------------------------------------------------
  443-  458 (14.27/20.56)	SLQQlGdyeSLLTPPL
  546-  557 (24.19/13.83)	SLMK.G...STLTPPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15786 with Med33 domain of Kingdom Viridiplantae
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