<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15784

Description Uncharacterized protein
SequenceMAKSNGNLDKWRDYFGTANSDIFDIIEYAVLVAAADCPKEFKLRREGIAEMLFTCKFTMCFGCDKVELAVPVVDGVVNDVDDEGKVKGKKESKANSSVGNHVDDVVNQVSNYSYDEAEALTEEIEEETQTFGEVMRIKDVIDNRQAESSELFECLRRLQLMALSVETLKATEIGKSVNSLRKHNSKDIRHLARTLIEDWKVLVDEWVNATAAFTGTESTPESMKASVVDQEEEGLPSPPLDDLAFFSAQTTSMELGQFFDGMDDDGNPRNSGEFNENRGNGRKPSLDNQNIPVRKQQSADCFGAAPKERKQEALIQKQTTVVKPNKPSGGNSGPGRQIRPSSEQKLKINETNFQQKSDKGTIQKRPMMSQQNKLRQSDEDAVQVKLEATKRKLQERYQEAENAKRQRTIQVMELHDIPKRAPNQGPGLKNPHMRPGNNNRHWGNGRR
Length447
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.866
Instability index44.36
Isoelectric point5.78
Molecular weight50237.63
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15784
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.52|      19|      92|     327|     345|       1
---------------------------------------------------------------------------
  327-  345 (35.05/20.78)	PSGGNSGPGRQ...IRP..SSEQK
  354-  373 (25.60/13.33)	QQKSDKGT.IQ...KRPmmSQQNK
  423-  440 (17.87/ 7.23)	....NQGPGLKnphMRP..GNNNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.74|      11|      30|      73|      83|       2
---------------------------------------------------------------------------
   73-   83 (20.88/14.39)	VDGVVNDVD....DE
  102-  116 (14.86/ 8.26)	VDDVVNQVSnysyDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.87|      20|      30|     212|     236|       3
---------------------------------------------------------------------------
  212-  236 (25.70/28.88)	AFTGTESTpeSMKasvVDQ.....EEEGLP
  244-  268 (31.17/18.15)	AFFSAQTT..SME...LGQffdgmDDDGNP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15784 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFTGTESTPESMKASVVDQEEEGLPSPPLDDLAFF
2) GQFFDGMDDDGNPRNSGEFNENRGNGRKPSLDNQNIPVRKQQSADCFGAAPKERKQEALIQKQTTVVKPNKPSGGNSGPGRQIRPSSEQKLKINETNFQQKSDKGTIQKRPMMSQQNKLRQSDEDAVQVKLEATKRKLQERYQEAENAKRQRTIQVMELHDIPKRAPNQGPGLKNPHMRPGNNNRHWGNGRR
212
256
246
447










Molecular Recognition Features






MoRF SequenceStartStop




1) LHDIPKRA
414
421