<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15779

Description Putative mediator of RNA polymerase II transcription subunit 37e
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGPADKPMIVVTYKGEEKQFSAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNGLENYAYNMRNTIKDDKISSQLPAADKKKIEDAIDEAIKWLDSNQLAEADEFEDKMKELESVCNPIIAKMYQGGAGGATMDEDDGPTVGGAGSGSGAGPKIEEVD
Length651
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.06
Grand average of hydropathy-0.408
Instability index33.06
Isoelectric point5.11
Molecular weight71224.89
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15779
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     343.28|     119|     278|     200|     323|       1
---------------------------------------------------------------------------
  200-  323 (179.40/132.74)	NVlIFDL.GGGTFDVSLLTIEEG.IFEVKATAGDTHLGGEDFDnRMVNHfVQEFKRKH...KKDI...SGNPRALRRLRTAC..ERAKRTLSSTAQTTIEiDSLYEGIDFYTT..ITRA.RFEELNMDLFRKCmEPV
  481-  612 (163.88/101.40)	NV.CFDIdANGILNVSAEDKTTGqKNKITITNDKGRLSKEEIE.RMVQE.AEKYKSEDeelKKKVeakNGLENYAYNMRNTIkdDKISSQLPAADKKKIE.DAIDEAIKWLDSnqLAEAdEFEDKMKELESVC.NPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.82|      27|     189|     170|     198|       2
---------------------------------------------------------------------------
  170-  198 (38.07/35.79)	GLNVMRIINePTaAAIAYGLD.KKATSAGE
  362-  389 (42.75/29.52)	GKELCKSIN.PD.EAVAYGAAvQAAILSGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      38|      55|       3
---------------------------------------------------------------------------
   16-   33 (19.07/12.20)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.65/26.71)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.28/17.77)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.19|      12|      19|     619|     630|       4
---------------------------------------------------------------------------
  619-  630 (21.99/14.33)	GGAGGATMDEDD
  640-  651 (21.20/13.52)	GSGAGPKIEEVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15779 with Med37 domain of Kingdom Viridiplantae
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