<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15767

Description Uncharacterized protein
SequenceMANICEKLSKWREYFVSSKTNIFEIIELAIIISAIDHPKEFKLKRDRVAQLLFSCKITRGNGCDKVEFVVPNADKDVPNTVNVDVDDEEEEPENSSDEEEEESRIIKEVLRNKSIIDDYRNETELSVYASLRELRKMDLTLETLKATGIGKSVNGLRKHKSANIQNLAKKMVENWSEMVNEYWLKAQAAFADAERIPESPKATVAGEEEERLPSIPLEDLSFVLNQATSFTLSRVLDGLDDDGNALSSGQTNNHREVGRKASNPASRQQNVTAASKVSNPVSRQQNVTAAPEANPVRRQQNITAASKVSNLGSRQQNVTAAPEANPVRRQQNVIAASKVSNPVSRHQNVTAAPEAKPVRRHQNVTAAPEAKPVRRHQNVTAAPNVSNPVRRQQNVTVAPKDKKGDHQKKQTSLAKPNKPPGDNSMPGRPIKPTFQRKLNNDDMKFQHKSDRSKIQTRPVPTQPNKLKRPQEDAEQVKLEAAKRKLQERYQEVERAKRQRVVQVVELRDMHKKEHPKHGPRTGNPHMRPANHSRPLVNRRQ
Length540
PositionUnknown
OrganismCapsicum baccatum (Peruvian pepper)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Capsiceae> Capsicum.
Aromaticity0.03
Grand average of hydropathy-0.962
Instability index55.46
Isoelectric point9.73
Molecular weight60892.87
Publications
PubMed=29089032

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15767
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     259.35|      28|      28|     283|     310|       1
---------------------------------------------------------------------------
  263-  279 (25.46/ 9.66)	...........NPASRQQNVTAASKVSN
  283-  310 (61.25/32.36)	RQQNVTAAPEANPVRRQQNITAASKVSN
  314-  341 (60.48/31.87)	RQQNVTAAPEANPVRRQQNVIAASKVSN
  345-  360 (27.28/10.82)	RHQNVTAAPEAKPVRR............
  362-  387 (50.60/25.61)	..QNVTAAPEAKPVRRHQNVTAAPNVSN
  391-  415 (34.28/15.26)	RQQNVTVAPKDKKGDHQKKQTSLAK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.24|      29|      38|     419|     448|       3
---------------------------------------------------------------------------
  419-  448 (50.69/28.25)	PPGDNSMPgRPIKPTFQRKLNNDDMKFQHK
  460-  488 (48.55/23.01)	PTQPNKLK.RPQEDAEQVKLEAAKRKLQER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.72|      13|      14|     185|     197|       4
---------------------------------------------------------------------------
  185-  197 (22.52/15.24)	KAQAAFADAERIP
  201-  213 (22.19/14.91)	KATVAGEEEERLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15767 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLDDDGNALSSGQTNNHREVGRKASNPASRQQNVTAASKVSNPVSRQQNVTAAPEANPVRRQQNITAASKVSNLGSRQQNVTAAPEANPVRRQQNVIAASKVSNPVSRHQNVTAAPEAKPVRRHQNVTAAPEAKPVRRHQNVTAAPNVSNPVRRQQNVTVAPKDKKGDHQKKQTSLAKPNKPPGDNSMPGRPIKPTFQRKLNNDDMKFQHKSDRSKIQTRPVPTQPNKLKRPQEDAEQVKLEAAKRKLQERYQEVERAKRQRVVQVVELRDMHKKEHPKHGPRTGNPHMRPANHSRPLVNRRQ
238
540










Molecular Recognition Features






MoRF SequenceStartStop




1) DMHKKEHPKHGPRTGNPHMRPANHS
2) GRPIKPTFQRKLNNDDMKFQH
3) KPVRRH
4) KPVRRH
508
427
356
371
532
447
361
376