<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15765

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSSGERSPKRQRLEGSYSPASPIPTFDTKTFIPPQTPPPSVRMSPSWTAQSLTAGQHQQQTGSGSGSGGTGSGTTFPTPPSTHGIYSHTNTHSGIDSARQTPAGDDEMDVRRTDENRRRDGDGDAEMTDTQAVDAGHRRTDHEREGTGGATAAASLTTSASASTMASGPAASPPIPGAGVLYRLRTAPIAPSRPHPTQDLLQLYDLKRIQASVARKDPVTGEKINVMRKSYANKVKALGLEGRNKAEANRHELEGLTDPGWGILVXGNKTMFQAHWESQNLVLGNADHENEMLRKLDSALKMEPGRLPKKEHDQWKGMLGLDESAATAAPVKSAGSKLPAGSALAKTAPAMAARSSAPSSPRGAGIRPDRSGKKRRYNDSSFEGYEQDDDGHHSAGMDDTGRRVSGSKRQKRQASEKSAAHQKGS
Length425
PositionHead
OrganismRamularia collo-cygni
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Ramularia.
Aromaticity0.04
Grand average of hydropathy-0.926
Instability index53.63
Isoelectric point9.53
Molecular weight45110.25
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15765
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.17|      44|      62|     210|     258|       1
---------------------------------------------------------------------------
  210-  241 (32.60/24.42)	.................................Q.ASVARKDPV..TG..EKINVMRKSYANkvkALGLE
  242-  303 (59.16/40.97)	GR.NKAEANRHE.LEGLtdpgwgilvxgnktmfQ.AHWESQNLV..LGnaDHENEMLRKLDS...ALKME
  305-  338 (22.40/ 9.01)	GRlPKKEHDQWKgMLGL.................dESAATAAPVksAG..SKL.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.88|      16|      17|     104|     119|       2
---------------------------------------------------------------------------
  104-  119 (30.29/19.03)	GDDEM.DVRRTDENRRR
  123-  139 (25.59/15.02)	GDAEMtDTQAVDAGHRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.18|      10|      26|     369|     380|       4
---------------------------------------------------------------------------
  369-  380 (14.66/14.63)	DRSGkkRRYNDS
  398-  407 (18.53/10.64)	DDTG..RRVSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.66|      19|     183|     162|     180|       5
---------------------------------------------------------------------------
  149-  167 (25.20/10.73)	GATAAASLTTSASASTMAS
  168-  186 (33.46/16.66)	GPAASPPIPGAGVLYRLRT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15765 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLRKLDSALKMEPGRLPKKEHDQWKGMLGLDESAATAAPVKSAGSKLPAGSALAKTAPAMAARSSAPSSPRGAGIRPDRSGKKRRYNDSSFEGYEQDDDGHHSAGMDDTGRRVSGSKRQKRQASEKSAAHQKGS
2) MSSGERSPKRQRLEGSYSPASPIPTFDTKTFIPPQTPPPSVRMSPSWTAQSLTAGQHQQQTGSGSGSGGTGSGTTFPTPPSTHGIYSHTNTHSGIDSARQTPAGDDEMDVRRTDENRRRDGDGDAEMTDTQAVDAGHRRTDHEREGTGGATAAASLTTSASASTMASGPAASPPIPGAGVLYRLRTAPIAPSRPHPTQDLLQLY
292
1
425
204










Molecular Recognition Features






MoRF SequenceStartStop




1) AVKKAIVPPIPLESLLRFSVGGLSL
2) GIRRTLW
207
159
231
165