<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15699

Description mediator of RNA polymerase II transcription subunit 30-like
SequenceMSSLPQKAPGGGLGGVPLQQQPQNLHTLACSGVPVLGQASNPAALREISPVFLCRIGQDTVQDIVTRTMEIFQITRATQLPNGVTQSQAAYQDRFGKLQEHLRQLSLLFRKLRLLYERCVEMTSDLQESPAELVPYVGEEMAPVRVEPCGSAVTQDKQEVLEKVRQKNQEMKVLMDQMRNLLWDINAMLTMRK
Length193
PositionHead
OrganismIctalurus punctatus (Channel catfish) (Silurus punctatus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Ostariophysi> Siluriformes> Ictaluridae> Ictalurus.
Aromaticity0.04
Grand average of hydropathy-0.306
Instability index57.89
Isoelectric point7.66
Molecular weight21630.84
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15699
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.31|      14|      15|      15|      28|       1
---------------------------------------------------------------------------
   15-   28 (26.66/17.48)	GVPLQQQPQNLHTL
   32-   45 (24.65/15.63)	GVPVLGQASNPAAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      15|      17|      65|      80|       2
---------------------------------------------------------------------------
   65-   80 (20.75/21.75)	VTRTMEIFQiTRATQL
   84-   98 (25.59/20.49)	VTQSQAAYQ.DRFGKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15699 with Med30 domain of Kingdom Metazoa
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