<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15698

Description Uncharacterized protein
SequenceMVFIIPGFIFLLCTAVGTKFHASSLKEQEVRAYREIERQEMHKILDGYLFICRKMGVQAEKLYIEMESIENGILELISGHGIRKLVMGAAADKRYSRNMMDVKSKKAISVCQQAPAYCHIWFICKQHLIYTKEGALDANGTECRQSSQQASQNTETGQSNHSRSQSFTLGQKNHPKLTNPAQDLLRRACSVTFGRQGGKSPALALPDNDGRPSAPHNMSDAEGASNVSSASSDECDTLSRSTSRGSLLSTYSSSGMVNVGLVSFDRTEGSEIGSELLTLPHRKEDPIHSTPPSVLQDRNIEDPLYDQLEQALSEAVNLRKEAFEAAVRRAKAERDAIEAIRRAKASEGLYAEELRQRKETEEALAKGKEELENIKNEKDEVMEELHIALDQKKSLERQIADNDQMVKELEQKIISAVELLQNYKNERDELQLERDNALKEAEELRKSRTEASSSHMPQFFSDFSFSEIEEATQNFNPSLKVGEGGYGSIYKGLLRHTQVAIKVLHSHSLQGPAEFQQEVDVLSKMRHPNLVTLIGACPEAWTLIYEYLLNGSLEDRLSCRGNSPPLSWQTRIRIATELCSVLIFLHSSKPHSIVHGDLKPANILLDANFVSKLSDFGICRLLSQNEDASVNTTICCRTDPKGTFAYMDPEFLSSGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDKGNLKILLDPLAGDWPFVQAEQLAHMALRCCDMNRKSRPDLASEVWRVLEPMKASCGGSSYFQFGSEEHCQPPPYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHETSPMTNLKLAHTNLVPNHALRSAIQEWLQQQ
Length833
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-0.441
Instability index51.94
Isoelectric point5.71
Molecular weight93168.42
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15698
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     204.89|      48|      48|     358|     405|       1
---------------------------------------------------------------------------
  267-  311 (45.63/25.69)	..T.E.....GSEigsELLTLPH.RKEDPIHSTPP.SVLQDRNIE..DPLYDQlEQA
  320-  356 (22.23/ 8.79)	KEAfEAAVRRAKA...ERDAIEAiRRAKASEGLYAeELRQ.................
  358-  405 (75.17/47.03)	KET.EEALAKGKE...ELENIKN.EKDEVMEELHI.ALDQKKSLE..RQIADN.DQM
  407-  456 (61.86/37.42)	KEL.EQKIISAVE...LLQNYKN.ERDELQLERDN.ALKEAEELRksRTEASS.SHM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.99|      35|      49|     614|     649|       2
---------------------------------------------------------------------------
  614-  649 (61.75/40.33)	SD...FGI..CRLLSQNEDASVNTTICCRTDpKGTF.AYMDP
  661-  701 (46.24/25.07)	SDvysFGIilLRLLTGRPALGITKEVQYALD.KGNLkILLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.57|      42|      88|     127|     170|       3
---------------------------------------------------------------------------
  127-  170 (68.09/45.22)	HLIYTKEGALD...ANGTECRQSSQQASQNTETgqSNHSRSQSFTLG
  216-  260 (66.48/38.14)	HNMSDAEGASNvssASSDECDTLSRSTSRGSLL..STYSSSGMVNVG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15698 with Med32 domain of Kingdom Viridiplantae
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