<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15693

Description Uncharacterized protein
SequenceMAEWEAGTSSRRGSTSRGAEEDDDDTVYVAVGKDFEENKLNLVWAIENFPGKRLCILHVHQPAKMIHLVGGKFPASRLGQHELREFQELERNIMLKILDDYVLFCGQLDVHADKVSIEMDDIGKGIIELVYHYHIKKLVMGAAANKHYSEEMMDLKSKKAKYVQLRVPRSCQIWYICNGYLICEGDSTCSTTNGYRDSASFMQQKTDGSGLELELHEVSLSEENSYNLDQLEESSIDQLYCQLECAMLEAEKFKKQACEESLRRGEAEKTAIKAVRRATALESLYAKELRCRKEIEGALAREKEHHQRTKNQRDEERVISMDQKLLQHIQVSKFDEKLKEMNDERLSAVEQCKEYKSERDKLQVEHDNVLKLAKELEEELSRKQEEEASCSQMHPFLSDFSLVEIHEETFNFDPLLRIGEGGYGSTYRANLCHTPVAIKVLNPETTQGRLEFQHEVEILGKLRHPNLAILIGACSEACALVYEYLPNGSLEDRLNCKDNTAPLPWQARIRIATELCSVLMFLHSSKPHGTVHGGVKPGNILLDANLGCKLSGFGIYRALSLSENSRTTILPHVTDSMFTFPYLDPHFLETRELSPSSDTYSFGIILLQLLTGKSGFRIITEIIDEINETNLSSFLDPLAGDWPFVQASQLAQLALRCCARNRSGRPDLASDVWRVLEPMRTFCSEPVQFGSEESEQPPSYFFCPIMQEVMQDPHVAADGFTYEAEALTGWLQSGHNTSPMTNLVLGHLNLVPNRSLRSAIQDWRQQHPNAIF
Length772
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.08
Grand average of hydropathy-0.430
Instability index47.65
Isoelectric point5.36
Molecular weight87635.41
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15693
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.77|      40|      92|     636|     682|       1
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  636-  682 (56.63/68.13)	DPLAGdW........PFVQASqLAQLALrccARNRSGRPdlASDVWRVLEPMRTF
  725-  772 (68.15/49.16)	EALTG.WlqsghntsPMTNLV.LGHLNL...VPNRSLRS..AIQDWRQQHPNAIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.70|      67|      92|     222|     296|       2
---------------------------------------------------------------------------
  222-  296 (93.54/74.17)	EENSYNLDQ..LEESSIDQLYCQLEcaMLEAEKFKK.QACEESlrRGEAEKTAIKA...VRRATALEslyaKELRCRKEIE
  315-  387 (93.16/53.96)	EERVISMDQklLQHIQVSKFDEKLK..EMNDERLSAvEQCKEY..KSERDKLQVEHdnvLKLAKELE....EELSRKQEEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15693 with Med32 domain of Kingdom Viridiplantae
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