<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15691

Description Uncharacterized protein
SequenceMQRYHAPSCTGAVNNPIGVASVRDTGRADSSSLPAINSRRPPSLSAYKLKCDKEPLNSRLGPPDFHPQIPNCPEETLIREYVQSGYRETVEGLEAIRKCLRAINESRAQKRKAGQVYGVPLSGSLLTKPGVYPEQRPCSEDFKKKWIEGLSQPHKRLQCLADHVPHGYRRKSLFEVLIRNNVPLPRATWFIKVTYLNQVRPSSAGISPGTPDKTQLSRTELWTKDVIEYLQMLLDEFFSRSNSQSASHSRDRSPQMLYAGSVQHRSDPEPVFIDGEEPSLYFRWWYVVRLLHWHHAEGLLLPSVIIDWVLSQLQKKDVLEILQLLLSIIYGVLDTIVLSQTYVRALVGIAIRYIREPSPGGSDLVDNSRRAYTMSALIELLRYLILAVPDTFVALDCFPFPPSVLSYGVNDGAFVSKVSEEARKTKDHSAGVVGMFRNKGLDAQYQSLSFDQVVSSIQKQADNLAKASCPGYLVHSVATAVQPLDKVLLQGDIREAYSFLFENFCDGAVDECWIEEVSPCLRSSLKWIGTVSLSFVCSVFFLCEWATCDYRDFRAAPPLDLKFTGKKDFSQVHIASWLLKLQMRDLQSKPRRKNERSIGINSLAEGLSHHNYVGRVRVGNGYENKGNSKNVTGKNGNSSDIFESPGPLHDIIVCWIDQHEVQKGEGLKRLQLLIVELIRSGIFCPHSYVRQLIISGIMDPREPLGDHNRRKRHSQILKQLPGLFVHDVLEEARIVEGSELLEVMHVYSNERRLLLRGFLCEQYQNSSKSNISMQKQKYHLTCLKDGGSAASFDQWKIIQSCSNTLTSKKVKSNADIEELKTSILLLFQIPNLSTTSDVELDESQGSVKRAAESNSSGVDSVEATPGSEDCRRAKRQKLNEKKSSCFQGHSPISDDEDTWWMGKGHKSLDLSKVDIPQKSSKQVSKGRQKVVRKSLAQLTAARIEGSQGASASHVCDNRVGCPDQKNGTEGETLKSVDGIRTLQGGDIASIAKALKQMRYLEKRSITVWLVTTVKQLVEETERNVAKANQFTRPFVSADNRSSIRWKLGEDQLSAVLYLMDVCNDLVSASKLLLWLLPKVISNASPTINSGRNVMLLQRNVENHACEVGEAFLLSCLRRYETILVATDLIPEVLTAAMQCVAVLLASGGRVSGSAILTYSRYLLKKYANMPSVFEWDKNFKATCDKRLLSELEPSRSLDGQFGFPLGVPAGVEDLDNFLRQKISGNRITRAGISMKDIVQRHIDDAFHYYFGKERKFFNAGTQKGPGYEKSDGGYQIAQHVIVGLLDCFRQTGGAAQEGDPSLVSSAVSAIVNNIGPTMAKMPDFIVPSNHSNSSSAMASLTIAKRILRIHISCLCLLKEALGERQSRVFEIALAAEAFSALATAFSPGKSSRSQFQLSPEDSNVKNDMSNNSVRSARVTKIAAAISALVVGAVIHGVASLERMVNVFRLKEGLDVIQFIRTIKSNPNGNTCPIPAFKVDDSIEVYVHWFRLLVGNCRTLFDGLIVELLGEPSVVALSRMQRMLPLNLVFPPAYSIFAFVIWRQIILSKDLANREDIIQLYRSLTMAIGDAIKHHPFRDVCLRDSRGFYDIVATDASDAEFAAMLSGLDLQSKSAAFVPLRGRLFLNAIIDCKMPVSMSTQDDSNRASGPGGSKGQHTENKTKLLDKIVNVLDTLQPAKFHWQWVELRLLLNEQALVEKLEAQDISLADAIRASSPGPEKAAASENENNFIVIILTRLLVRPDAAPLFSELVHVFGRSLEDSMLLQAKWFLGGQDVLLGRKTIRQRLISIAESKSLSTKAQFSKPWGWCRSDFDPLTNRGDKKFEVTSLEEGEVVEDGSDTKKSGKGSTQMLNSDGFSVSQQSKTERAFIELVLPCIDQGSDESRNAFASDLIKQLNNIEQQINTAARSASKQAGSVSSGLEGPASKSSNRKVIRGGSAGMNRRTAGAADSALPPPAALRASMSLRLQLLLRLLPIICTDGEPSGRNMRHMLASVILRLLGNRVVHEDADLSFSPLQSSQSKMEFESPLETPSADLCGESLFDRLLLVLHGLLSNKQPIWLKSRSSSKLMNDFSGDSPGLDREVLESLQDPDRLKAAGTRSKPTVNSVYLINPIHDHT
Length2117
PositionKinase
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-0.247
Instability index48.32
Isoelectric point8.78
Molecular weight234691.57
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15691
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.51|      29|      35|     519|     553|       1
---------------------------------------------------------------------------
  519-  553 (46.91/43.18)	PCLrsSLKWIGTVSLSFVcsvfFLCEW.ATCDYRDF
  557-  586 (48.60/27.95)	PPL..DLKFTGKKDFSQV....HIASWlLKLQMRDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.63|      22|      33|     450|     471|       2
---------------------------------------------------------------------------
  450-  471 (37.58/28.27)	FDQVV..SSIQKQADNLAKASCPG
  484-  507 (34.05/24.76)	LDKVLlqGDIREAYSFLFENFCDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     298.14|     130|     329|     588|     749|       3
---------------------------------------------------------------------------
  301-  423 (90.40/48.34)	LPSVIIDWV.LSQLQKKDVLEILQLLlsIIYGVLDTIVLSQTYVRALVGIAIRYIREPspggsdLVDNSRRAYTMSALIELlrylilavPdtfvaldcfpfppsvlsygvndGAFVSKVSEEAR.........................................................................................................................................................................................................................
  588-  622 (-5.95/33.64)	..............................................................................................................................................ktkdhsagvvgmfrnkgldaqyqslsfdqvvssiqkqadnlakascpgylvhsvatavqpldkvllqgdireaysflfenfcdgavdecwieevspclrsslkwigtvslsfvcsvfflcewatcdyrdfraappldlkftgkkdfsqvhiaswllklqmrdlqSKPRRKNERSIGInsLAEGLSHHNYvgrvRVGNGY
  648-  749 (162.04/105.56)	LHDIIVCWIdQHEVQKGEGLKRLQLL..IVELIRSGIFCPHSYVRQLIISGIMDPREP......LGDHNRRKRHSQILKQL........P......................GLFVHDVLEEARIVEGSELLEVM..HVYSN.......................................................................................................................................................................................................
 1056- 1111 (51.65/18.47)	.................................................................................................................LYLMDVCND..LVSASKLLLWLlpKVISN....................................................................................................................................................................ASPTINSGRNVML..LQRNVENHAC....EVGEAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     769.41|     272|     891|     755|    1092|       6
---------------------------------------------------------------------------
  755- 1074 (373.11/318.50)	LRGFLCEQYQNSSKSNISMQKQKYHLTCLKDGGS.......................AASFdQWKIIqscsntltskkvksnadieELKtsILLLFQ..IPNLsTTSDVELDE.....SQGSVKRAAESNSSGVDSVEATpgsEDCRRAKRQKLNEKKSSCFqGHSpISDD...EDTWWMGkGHKSLdLSKVDIPQkssKQVSKGRQkvvrKSLAqlTAARIEGSQGASASHVcDNRVGCPDQK....NGTEGETLKsvDGIRTLQGGD.....IASIAKALKQMRYLEKRSITVwLVTTVKQLVEETeRNvAKANQFTR.............................PFVSADNRSSIR.......WKLGEDQLSAvlyLMDVCNDLVSAS...KLLLW
 1619- 1971 (396.29/224.16)	LRGRLFLNAIIDCKMPVSMSTQDDSNRASGPGGSkgqhtenktklldkivnvldtlqPAKF.HWQWV...................ELR..LLLNEQalVEKL.EAQDISLADairasSPGPEKAAASENENNFIVIILT...RLLVRPDAAPLFSELVHVF.GRS.LEDSmllQAKWFLG.GQDVL.LGRKTIRQ...RLISIAES....KSLS..TKAQFSKPWGWCRSDF.DPLTNRGDKKfevtSLEEGEVVE..DGSDTKKSGKgstqmLNSDGFSVSQQSKTERAFIEL.VLPCIDQGSDES.RN.AFASDLIKqlnnieqqintaarsaskqagsvssglegPASKSSNRKVIRggsagmnRRTAGAADSA...LPPPAALRASMSlrlQLLLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.61|      57|     142|    1326|    1387|       8
---------------------------------------------------------------------------
 1277- 1342 (85.51/49.38)	AQHVIVGLLDC...FRQTGGAAQEG..DPSLVSSAVSAIVNNIGPtmakmpdfiVPSNHSNSSSAMASLTI
 1343- 1413 (73.09/54.49)	AKRILRIHISClclLKEALGERQSRvfEIALAAEAFSALATAFSPgkssrsqfqLSPEDSNVKNDMSNNSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.55|      15|     891|    1075|    1092|       9
---------------------------------------------------------------------------
 1075- 1092 (22.55/19.36)	LLPKVISNASPtinSGRN
 1972- 1986 (29.99/16.91)	LLPIICTDGEP...SGRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.07|      17|      93|     216|     234|      10
---------------------------------------------------------------------------
  216-  234 (27.23/26.13)	LSrtELWTKDVIEYLQMLL
  310-  326 (28.84/19.61)	LS..QLQKKDVLEILQLLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15691 with Med12 domain of Kingdom Viridiplantae
Unable to open file!