<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15683

Description Uncharacterized protein
SequenceMSVSIENSVLDRVIGITKVAQEKGIDPLLWALQIISNLSSNGVVLPSLELAEVLVSYICWDNNVPILWKFLEKALVLKILPPLMVIALLSERVIARRHSQPVAYRLFMELLKRHGFSLKSQTNASDYMKVMKSIDAVLHLSEHFGLQASDPGILMVEFNFSIVWQLLDASLDDEGLLELIPEKKSRWATKLEEMEIDGHENYDEKSVEHLERLQNLNTEMAIEIIGLFLKNKLTSRILYLARQNLPSHWVRFIQRLQLLGANSLVLRNSKTLTAEDLLQLTSETHLVLIKESKASSLQKFHEVMALGSLVSSVGLCHGASPSALWLPLDLVLEDAMDGYQVNATSAIEIITGLTKTLQAINRTTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCILLSIIPLVVADLIEEEENVPINESEWGSTNHWKEKNVKKRHNALVSSLQLLGDYQSLLIPPQSVVSAANQAAAKAMLFISGINVGSTYFECINMNMPINCAGNMRHLITEACIARNVLDTSAYFWPGYMTGCINQIPHGVTAELPGWASFMKGAQLTPVMISALVSIPASSLAELEKVYELAVRGPDDEKMSAATILCGASLLRGWNIQEHTVHFITRLLSPPVPVDYSGVGSHLISYAPILNVLIVGLASVDCVQIFSLHGLIPQLACSLMPICEVFGSCVPDVSWNLPTGEDISAHAVFSNAFALLLKLWRFNRPPLEHGVGDVPTVGSQLTPEYLLSVRNSHLVSSGNAHKDRHKRRLSAVATSASLQPIFMDSFPKLKIWYRQHQKCLASTLSGLVSGTPVHQIVNVLLNMMFRKINRGSQVLTITSGSSCSSGSVNDDSSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRGIWRPVYMNGTDWPSPAANLSNVEEKIKKILAATGVDVPSLAAAGSSPATLPLPLAAFASLTITYKLDKTSERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAVFQLLKSCFTATLSLGPTAISSNGGVGALLGHGFGSHFHGGISPVAPGILYLRVHRSIREIVFITEEIISLIMHSVREIACSGLPREKLENLKRTKNGLRSGQVSLAAAMTRVKLAASLGASLVWLSGGIGLVHSLFKETLPSWFIAVHKSEQEEGPEGMVPMLQGYALAYFAVLCGAFAWGIDSSTSASKRRPKVLAAHMKLLASALDGRISLGCDWATWRSYISAFVSLMVGCTPSWVLEVDADVLKRLSKGLRQWNEEELALALLGIGLVGTMGAAAQLIIEEQ
Length1322
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy0.227
Instability index43.58
Isoelectric point6.68
Molecular weight144451.19
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     267.31|      89|     190|     711|     812|       1
---------------------------------------------------------------------------
  711-  812 (131.22/113.34)	LWRfnrPPLEHGVgDVPTVGSQLT..PEYLLSVrnshLVSSGnahKDRHKrrLSAVATSASLQPIFMDSFPKLKIWYRQHQKC.....LAS.TLSGLVSGTP..VHQIVNVL
  910- 1008 (136.09/82.53)	IWR...PVYMNGT.DWPSPAANLSnvEEKIKKI....LAATG...VDVPS..LAAAGSSPATLPLPLAAFASLTITYKLDKTSerflnLAGpALESLAAGCPwpCMPIVASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.93|      30|      93|    1153|    1183|       2
---------------------------------------------------------------------------
 1153- 1183 (49.49/32.88)	SLGAS.LVWLSGGIGLVhSLFKETLPSWFIAV
 1248- 1278 (53.44/30.77)	SLGCDwATWRSYISAFV.SLMVGCTPSWVLEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.74|      56|     189|      63|     120|       3
---------------------------------------------------------------------------
   63-  120 (85.60/76.84)	NVPILW.KFLEK.......ALVL...KILPPLMVIALLSE.RVIARRHSQPVAYRLFMELLKrHGfSLKS
  244-  311 (70.14/51.95)	NLPSHWvRFIQRlqllganSLVLrnsKTLTAEDLLQLTSEtHLVLIKESKASSLQKFHEVMA.LG.SLVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.83|      14|     688|     433|     446|       7
---------------------------------------------------------------------------
  415-  428 (24.76/22.00)	EEENVPINESEWGS
  433-  446 (22.07/18.55)	KEKNVKKRHNALVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.85|      24|     158|    1127|    1150|       9
---------------------------------------------------------------------------
 1127- 1150 (39.53/23.24)	LKRTKNGLRS.GQVSLAAAMTRVKL
 1283- 1307 (34.32/19.25)	LKRLSKGLRQwNEEELALALLGIGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.55|      43|     210|     834|     884|      16
---------------------------------------------------------------------------
  834-  884 (61.26/56.51)	SCSSGSVnddsSLRPklPAWDILEAVPFVVDAALTACAHGRLSPreLATGL
 1042- 1084 (78.29/47.69)	SCFTATL....SLGP..TAISSNGGVGALLGHGFGSHFHGGISP..VAPGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      13|      17|     341|     357|      18
---------------------------------------------------------------------------
  341-  353 (20.30/18.10)	VNATSAIEIITGL
  360-  372 (24.64/10.62)	INRTTWHDTFLGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15683 with Med33 domain of Kingdom Viridiplantae
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