<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15682

Description Uncharacterized protein
SequenceMEQEQVDLDHHGLQSGVGGKCIGNWRSFLCMERVIASVSLYGCSTVRLSSWQIPNEVMELKKKQEAEVSKENEVLVARSNALTEKAPVPINLSASAVNTGGRDAISLRASSAPGTSSALDLIKKKLQDSGTPITSPSAVSLGLTTPESNGSRAIEPAAKGLQSENSKDKQKDANGDGNESDSSSDSEDEDNGPTKEECIIQFKEMLKERGIAPFSKWEKELPKIVFDPRFKAIPSHSSRRSLFEHYVKTRAEEERKEKRAAQRAAIEGFKQLLEEASEDINQNADYQTFRKKWGNDPRFEAVDRKDREHLLNERIILVKKAVQEKAQAERAAAAASFKSMLREKGDLTVNSRWSKVKESLRNDPRYKSVRHEDREVLFNEYISELKAVEDGAEREAKIRREEQEKLKERERELRKRKEREEQEMERVRVKVRRKEAVASFQALLVETIKDPQASWTESKPKLEKDPQGRATNTDLDPSDTERLFREHVKMLYERCANDFKSLLAEVINAEAAAQKTENGKTVLDSWSTAKRLLKPDPRYNKMPRKDRESLWRRYADDMSRKQRTTVDQKEDKHADSKNRNSTDSGRYLSGSRRTYDGR
Length598
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.05
Grand average of hydropathy-1.039
Instability index45.77
Isoelectric point8.95
Molecular weight68230.60
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15682
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     473.25|      66|      66|     250|     315|       1
---------------------------------------------------------------------------
  147-  188 (42.12/23.23)	....ESNGSRAI.EPAA.....KGLQSE..NSKDKQKDANG.D......G.......N.......ESD.SS....SD.SED.........
  189-  247 (61.53/37.88)	......EDNGPT.KEEC.IIQFKEMLKE....RGIA.......PF.SKWE.......KelpkivfDPRFKA....IPsHSSRRSLFEHYV
  250-  315 (108.52/73.35)	RAEEERKEKRAA.QRAA.IEGFKQLLEE..ASEDINQNADY.QTFRKKWG.......N.......DPRFEA....VD.RKDREHLLNERI
  317-  382 (92.18/61.02)	LVKKAVQEKAQA.ERAAaAASFKSMLRE...KGDLTVNSRW.SKVKESLR.......N.......DPRYKS....VR.HEDREVLFNEYI
  386-  427 (47.44/27.25)	KAVEDGAEREAKiRREE.QEKLK...ER..ERE.LRK.........................................RKEREEQEMERV
  432-  488 (65.43/40.82)	........RR....KEA.VASFQALLVE..TIKD..PQASW.TESKPKLE.......K.......DPQGRAtntdLD.PSDTERLFREHV
  491-  550 (56.04/33.74)	LYE...........RCA..NDFKSLLAEviNAEAAAQKTENgKTVLDSWStakrllkP.......DPRYNK....MP.RKDRESL.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.58|      14|      16|     103|     116|       2
---------------------------------------------------------------------------
  103-  116 (24.29/16.17)	DAI..SLRASSAPGTS
  120-  135 (20.28/12.33)	DLIkkKLQDSGTPITS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15682 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKIRREEQEKLKERERELRKRKEREEQEMERVR
2) ITSPSAVSLGLTTPESNGSRAIEPAAKGLQSENSKDKQKDANGDGNESDSSSDSEDEDNGPTKEECIIQF
3) LLKPDPRYNKMPRKDRESLWRRYADDMSRKQRTTVDQKEDKHADSKNRNSTDSGRYLSGSRRTYD
4) SWTESKPKLEKDPQGRATNTDLDPSDTERL
396
133
532
454
428
202
596
483










Molecular Recognition Features






MoRF SequenceStartStop




1) DSWSTAKRLLKPDPRYNKMPRKDRESLWRRYAD
2) SGRYLSGSRRTY
524
584
556
595