<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15674

Description Uncharacterized protein
SequenceMDNTNWRPTAQGGEPAIDTGDWRAQLPPDSRQRIVNKIMETLKRHLPFSGQEGLDELKKIAERFEEKIYTAATSQSDYLRKISLKMLTMESKSQKPQDHNQGQSLPLPLPVNQTRQQLLPQNIQNNITSIGVQSSPSLTSVLPQVSGLTQTSIPSVVGQTPNMQNISGVPQNTAGNSTGQGVPSNMFANSQRQMAGRQQVVSQQQQQQQQSQNPQQYLYQQQLQQQLMKQKIQQANRPHSLVQSHIQQQQQQQQNLLQPTQLQSSQQSSMQTSSVMQPTMMQSVISGLQQSQPPPVQQSTQSMLQQHPHSVLRQQQQLQQPASIHQQQTQMMQQQLLPPQHQQQQLMGQQPNGTNMQQNQLIGQPNNVGDIQQQQQQQQRLLSQQNNLQSLPQQQQHQQQQLMAQQNNLPSVHQQQLGSQSNVPGLQQQQQQQLLGTQNGNSSMQTNQLSMHMMQQPKVTMQQQTSTNMLTTQGQQSQTQVPQQQLMSQIQSQPTQLQQQMGLPQQSNPLQLDLQQRLQGSSQGPGSLLQQQNVVDQQKQLYQSQRPLQEASSTSVDSTAQTGHANGGDWQEEVYQKIKVMKELYLPELNEMYQKIAAKLQQHDSLPQQPKSEQLEKLKIFKAMLERILSFLQVSKNNILPGFKEKLGSYEKQITNFINTNRPRKPMPSLQQGQLPQSHIQQPQSQVPQIQSHENQMNPQMQSVNLQGSVPTMQQNNMSSLQHNSLPSLSGFSSSQQNTMNSLQPASNLDSGQGNALSSLQQPVVGSLQQNSGSAPQQASINNLSSQSGLNMLQPNISLQSNPNMLQHQHLKQQQDQQILQSQQLKHQLQQRQMQQQLMQKQHLLQQQQQQLHQQAKQQMPAQMQGQQMPAQMQGQQIQQAHQMNDVNEIKIRQGMGVKPGFQQHLPAGQRTAYSHQQMKSGSSFTMSSTQLLQAASPQLSQHSSPQVDQQNLQTSLTRTGTPLQSANSPFVIPSPSTPLAPSPMPGDSEKQITGISSLSNAGNVGQQQTTGAQATAPSLAFGTPGMSASPLLAEFTGSDGAHGNALTTTSGKSSVTERPLERLIKAVKSLSPNALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTNCRLQAINFITQDGMTGTRKMKRYTSAMPLNVVSSASSISDSFKQLNGPETSDLESTATSSVKRPRIEANHALLEEIREINQRLIDTVVDISEEDVGPTAAAPSAEGSEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKLPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVISDHAQQSGGGSFSSKYGTWENCFSAA
Length1347
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.03
Grand average of hydropathy-0.779
Instability index72.93
Isoelectric point9.25
Molecular weight148589.62
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15674
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     523.56|      54|      54|     333|     386|       2
---------------------------------------------------------------------------
  214-  268 (64.46/13.80)	P.................QQYLYQQQLQ..QQLMKQ.K.....I...QQAN.......RPHSLvqS....HIQQQ....Q..QQ......QQNLLqptqlqsSQQS
  271-  334 (52.79/ 9.48)	QtssvmqptmmqsvisglQQSQPPPVQQstQSMLQQ.HPHSVLR...QQQQL.....QQP.....A....SIHQQ....Q..TQ..........M.......MQQ.
  335-  386 (98.26/26.32)	...................QLLPPQHQQ..QQLMGQ.QPNGTNM...QQNQL....IGQPNNV..G....DIQQQ....Q..QQ......QQRLL.......SQQN
  429-  474 (46.17/ 7.03)	.........................QQQ..QQLLGT.QNGNSSM...QTNQLsmhmMQQPK..........VTMQ....Q..QT......STNML.......TTQG
  476-  533 (56.38/10.81)	Q.................SQ...TQVPQ..QQLMSQiQSQPTQL...QQQ......MGLPQQS..NplqlDLQQRlqgsS..QG......PGSLL.......QQQN
  644-  695 (51.41/ 8.97)	K.................EKLGSYEKQI..TNFINT.NRPRKPMpslQQGQL.......PQ....S....HIQQP....Q..SQ......VPQIQ.......SHEN
  777-  815 (45.98/ 6.96)	Q.................QASINNLSSQ..SGLNML.QPN.ISL...QSN.........PNML...........................QHQHL.......KQQQ
  816-  864 (57.95/11.39)	D.................QQILQSQQLK..HQLQQR.QMQQQLM...QKQHL....LQQ.............QQQ....QlhQQ......AKQQM.......PAQM
  865-  911 (50.16/ 8.51)	Q.................GQQMPAQMQ.......GQ.Q.....I...QQAH.......QMNDV..N....EIKIR....Q..GMgvkpgfQQHLP.......AGQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     291.49|      70|      71|    1139|    1208|       3
---------------------------------------------------------------------------
 1024- 1071 (31.29/12.93)	.....TPGM......SASPLLAEFTGSD.GAHGNALTTTSGkSSVtERP..leR.lIKAVKSL.....................
 1073- 1137 (85.79/48.91)	.........PNALSASVSDIGSVVSMID.RIAGSAPGNGSR.AAV.GED....L..VAMTNCRLQAINFITQDGMTGT.RKMKR
 1138- 1207 (107.45/63.21)	Y....TSAMPLNVVSSASSISDSFKQLN.GPETSDLESTAT.SSV.KRP....R..IEANHALLEEIREINQRLIDTV.VDISE
 1208- 1280 (66.95/36.47)	EdvgpTAAAPSAEGSEGTIVKCSFSAVAlSP...NLKSQYA.SAQ.MSPiqplRllVPTNYPNCSPI......LLDKLpVEISK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.63|      14|      15|     732|     745|       4
---------------------------------------------------------------------------
  732-  745 (28.83/11.78)	FSSSQQNTMNSLQ.P
  749-  763 (20.80/ 6.06)	LDSGQGNALSSLQqP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.81|      15|      15|     928|     942|       6
---------------------------------------------------------------------------
  540-  554 (24.16/ 8.08)	QLYQSQRPLQEASST
 1004- 1018 (21.65/ 6.31)	NVGQQQTTGAQATAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.13|      17|      20|     134|     150|       7
---------------------------------------------------------------------------
  134-  150 (29.35/14.92)	SSPSL...TSVLPQVSGLTQ
  152-  171 (26.78/12.91)	SIPSVvgqTPNMQNISGVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.55|      17|      18|     572|     588|       8
---------------------------------------------------------------------------
  572-  588 (29.57/15.31)	EEVYQKI..KVMKELYLPE
  590-  608 (25.98/12.63)	NEMYQKIaaKLQQHDSLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.18|      18|      18|     929|     946|       9
---------------------------------------------------------------------------
  929-  946 (32.83/15.68)	STQLLQAA....SPQLSQHSSP
  949-  970 (23.36/ 8.41)	DQQNLQTSltrtGTPLQSANSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.62|      15|      20|      23|      42|      11
---------------------------------------------------------------------------
   23-   37 (26.42/ 6.91)	RAQLPPDSRQRI..VNK
   43-   59 (17.20/11.12)	KRHLPFSGQEGLdeLKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.79|      16|      21|      83|      98|      12
---------------------------------------------------------------------------
   83-   98 (27.85/14.59)	SLKM.LTMESKSQK..PQD
  104-  122 (19.93/ 7.76)	SLPLpLPVNQTRQQllPQN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15674 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKQITNFINTNRPRKPMPSLQQGQLPQSHIQQPQSQVPQIQSHENQMNPQMQSVNLQGSVPTMQQNNMSSLQHNSLPSLSGFSSSQQNTMNSLQPASNLDSGQGNALSSLQQPVVGSLQQNSGSAPQQASINNLSSQSGLNMLQPNISLQSNPNMLQHQHLKQQQDQQILQSQQLKHQLQQRQMQQQLMQKQHLLQQQQQQLHQQAKQQMPAQMQGQQMPAQMQGQQIQQAHQMNDVNEIKIRQGMGVKPGFQQHLPAGQRTAYSHQQMKSGSSFTMSSTQLLQAASPQLSQHSSPQVDQQNLQTSLTRTGTPLQSANSPFVIPSPSTPLAPSPMPGDSEKQITGISSLSNAGNVGQQQTTGAQATAPSLAFGT
2) KQLYQSQRPLQEASSTSVDSTAQTGHANGG
3) MDNTNWRPTAQGGEPAIDTGDWRAQLPPDSRQRIVNKIMETL
4) PLLAEFTGSDGAHGNALTTTSGKSSVTERPLERL
5) QQQNLLQPTQLQSSQQSSMQTSSVMQPTMMQSVISGLQQSQPPPVQQSTQSMLQQHPHSVLRQQQQLQQPASIHQQQTQMMQQQLLPPQHQQQQLMGQQPNGTNMQQNQLIGQPNNVGDIQQQQQQQQRLLSQQNNLQSLPQQQQHQQQQLMAQQNNLPSVHQQQLGSQSNVPGLQQQQQQQLLGTQNGNSSMQTNQLSMHMMQQPKVTMQQQTSTNMLTTQGQQSQTQVPQQQLMSQIQSQPTQLQQQMGLPQQSNPLQLDLQQRLQGSSQGPGSLLQQQNVVD
6) QTSIPSVVGQTPNMQNISGVPQNTAGNSTGQGVPSNMFANSQRQMAGRQQVVSQQQQQ
7) SLKMLTMESKSQKPQDHNQGQSLPLPLPVNQTRQQLLPQNIQNNITSI
651
539
1
1031
252
150
83
1024
568
42
1064
536
207
130










Molecular Recognition Features






MoRF SequenceStartStop




NANANA