<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15672

Description Uncharacterized protein
SequenceMEFFNPTHPPLLEPARESLSGLSSPEVFRTRFGRMASSQLPDIVEESGGVSVSVNGGSCGGDADKVYVAVGKSVKKTLGLLHWSFKRFGSREICILHVHQPSPLIPTLLGKLPASQANAEVVSAHRRQEREQTKKLLEIYLAICHRAKVEASIITTDCDYVQNGIVQLLNRHGARMLVMGTGPGNCMKVKKGSIKENYVAKSAPLYCAIWFINKRKHVWMREASERSTFLPSYDHARGGSMETLSSKSLQYSKNILPLQPEYLCSSSSTGITCAQISHCAQSESTCAEVPMLHTRSRSTDTHFLHSVHSSFSPRSSSSGTSTERSVTSDSDSKVEEVSLYCQLEELRIEAEASRNEAFEEMLKRKKLEFQTLEAISKVKIFDSAYANEVKLRKEAENALRNAVEEQEKLLEAKEEVTKQLQQAMRSVAFLDSHVQEANYRRDGAAGELELIQTSIATLRQEKQTIRWQKMEAARWLERWKNRGQAGAPKCNGLLGFVEELPELAEFSESDLQTATCNFSESFKLGQGGYGYVYKGEMLGRTVAIKKLHSNNMQGQSEFQKEVQVLGRLQHPHLVTLLGACPEASSLVYEYMPNGSLHDSLFRRSNISPLTWKVRVRIIAEISSALCFLHSSKPEKIVHGDLKPQNILLDSELSCKICEFGICRLVTDDTLSCPSFRRGAEPKGAFPYTDPEFQRVGVLTTKSDIYSFGVIILQLLTGRPPVGLVGEVRRTMSCGKLASILDPSAGEWPTFVSKRLGDLGLHFCELSSRERPELTPALVRELEQLHITEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLENGRETSPMTNLKLSHLHLTPNHALRLAIQDWLCKF
Length862
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-0.333
Instability index53.74
Isoelectric point7.54
Molecular weight96321.95
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15672
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.52|      22|      25|     741|     764|       1
---------------------------------------------------------------------------
  743-  764 (41.07/31.15)	SAGEWPTFVSKRLGDL.GLHFCE
  766-  788 (32.44/15.71)	SSRERPELTPALVRELeQLHITE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.15|      25|      25|     411|     435|       2
---------------------------------------------------------------------------
  393-  412 (20.66/13.14)	.....KEAENALRNAVEEQEKLLEA
  413-  437 (38.00/31.38)	KEEVTKQLQQAMRSVAFLDSHVQEA
  441-  463 (27.49/20.32)	RDGAAGELELIQTSIATLRQEKQ..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15672 with Med32 domain of Kingdom Viridiplantae
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