<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15667

Description Uncharacterized protein
SequenceMEGMMQDQSQLQNQQPPPQIVVPERLNQAVQQQLNLEAVKTRAISLFKAISRILEEFDAHARSNVTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLQGLQSLPISSQIEKLKNRIDMIAAACESAEKVLDDTRKAYQFGTRQGPTILPTLDKSQAAKIQEQENLLRAAVNYGEGLRVTGDQRQITSALPMHLADVLLVGDGGQHNFSDSSGMYMKSTPPLPSNSINNQGPLLQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
Length558
PositionHead
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.04
Grand average of hydropathy-0.725
Instability index61.47
Isoelectric point9.10
Molecular weight61805.70
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15667
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.59|      22|      22|     330|     351|       1
---------------------------------------------------------------------------
  341-  359 (31.32/ 8.59)	KMMQLPHQQQL.....lAQQQFRQ
  391-  412 (27.80/ 6.69)	FSQPLGHQQ.FqGRQL.PSGHVQH
  501-  519 (36.47/11.38)	SMM..PIQPQ..QPQQ.QQQLGSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.43|      19|      48|     322|     340|       2
---------------------------------------------------------------------------
  322-  340 (37.49/12.54)	PQ.QQTQQQQQQQQQQQQRQ
  371-  390 (31.94/ 9.56)	PQlHDLQGQNQQKFQQHQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.53|      17|      22|     462|     478|       5
---------------------------------------------------------------------------
  420-  439 (19.76/ 6.39)	NQgnPLNRHLsQFSGTANNA
  462-  478 (33.49/15.53)	SQ..PLVPRM.QFGLSGSNP
  484-  499 (30.27/13.38)	SQ..ILNDQM..FNMGVSNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.51|      20|      65|     198|     227|       6
---------------------------------------------------------------------------
  173-  196 (25.74/22.25)	RKAYQFGtrQGPTIlpTLDKSQAA
  206-  225 (34.77/18.69)	RAAVNYG..EGLRV..TGDQRQIT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15667 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNFSDSSGMYMKSTPPLPSNSINNQGPLLQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
244
558










Molecular Recognition Features






MoRF SequenceStartStop




NANANA