<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15665

Description Uncharacterized protein
SequenceMATRDSETSRESMSQGEDDTVYVALGKDVEQQKLTLLWALENFPGKKFCILHVHQPSKTIPCVGGNFLANRVDQQELKEFQELERKIMHRILEYYLLLCHQVEVQAEKLCIEMDDTGKGIVELAYQHGIKKLVMGAAADKRYSEDMADLKSRKAKYVQQRIPLCCQVWYVCKGYLVHTGEGELTCSSANALGHHDSASSERIDETGLELELCEVPQSEEDIHLHNPDALEESSTNQLYEQLEQALMEAEKFKREAFEESLKHWEAEKIAIKAIRRAKALESLYAKELKLRKESEEALVKEKEDHQRTKKQWDEDRLITMDQRLLQQIQSSNFDNKIKEMNDEILTAVEQCKEYKKERDELELERDIVLKIAEEISKFQAGDLEIDIALKIAEELSKRQAEDASAIHMGQFLSVFSLSEIKEATRNFDPSFKIGEGGYGSIYKGVLRYTPVAIKVLNPDSMQGPLEFKQEVEMLSKLRHPNLVILIGACLEAFALIYEYLPNGSLEDRLSCKDNSSPLPWQARIRIATELCSVLIFLHSSNPHSIVHGDLKPGNILLDAKLACKLSDFGICRALSLQENSRNRTLYHKTDPKGTFLYLDPYFLATGELSPKSDTYSFGVILLQLLTGRSAFGIVKQIGDALDEGTLSSFLDPLAGDWPFVQAKQLARLALRCCSMNRNSRPDLAIEAWRVLEPMRASCGDSSSLQFSSLWRQQSPSYFLCPILQEMMRDPHVAADGFTYEAEALIGWLESGHNTSPMTNLELQHFNLVPNHSLRSAIQEWQQFSRSS
Length786
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.08
Grand average of hydropathy-0.399
Instability index42.37
Isoelectric point5.34
Molecular weight89311.74
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15665
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.50|      19|      19|     361|     379|       1
---------------------------------------------------------------------------
  361-  379 (33.97/22.54)	ELERDIVLKIAEEISKFQA
  381-  399 (33.53/22.15)	DLEIDIALKIAEELSKRQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.58|      47|      59|     504|     551|       2
---------------------------------------------------------------------------
  463-  514 (59.87/40.33)	PLEFKQEVEM...LSKLrhPNLVILIGAClEAFALIYEYLPN..gsLEDRLSCK........DNS
  516-  574 (64.64/39.11)	PLPWQARIRI...ATEL..CSVLIFLHSS.NPHSIVHGDLKPgnilLDAKLACKlsdfgicrALS
  575-  609 (33.07/17.64)	.LQENSRNRTlyhKTDP..KGTFLYL....DPYFLATGELSP.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.98|      26|      46|     165|     191|       3
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  165-  191 (44.78/32.61)	CQVWYVCKGYLVHTGEGeLTCSSANAL
  212-  237 (46.20/29.02)	CEVPQSEEDIHLHNPDA.LEESSTNQL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15665 with Med32 domain of Kingdom Viridiplantae
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