<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15664

Description Uncharacterized protein
SequenceMEGMMQDQSQLQNQQPPPQIVVPERLNQAVQQQLNLEAVKTRAISLFKAISRILEEFDAHARSNVTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLQGLQSLPISSQIEKLKNRIDMIAAACESAEKVLDDTRKAYQFGTRQGPTILPTLDKSQAAKIQEQENLLRAAVNYGEGLRVTGDQRQITSALPMHLADVLLVGDGGQHNFSDSSGMYMKSTPPLPSNSINNQGPLLQQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
Length559
PositionHead
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.04
Grand average of hydropathy-0.730
Instability index61.72
Isoelectric point9.10
Molecular weight61933.83
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15664
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     175.30|      24|      24|     345|     368|       1
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  337-  355 (35.08/ 9.42)	QQQRQKMM.......QLP..HQQQLLAQ
  356-  382 (35.32/ 9.53)	QQFRQSSMQG.LGQnQLPqlHDLQGQNQ
  383-  403 (35.79/ 9.76)	QKFQQHQMQ..FSQ.PLG..HQQ.F.QG
  491-  512 (35.89/ 9.81)	QMFNMGVSN..PGS.MMP..IQPQ.QPQ
  513-  536 (33.22/ 8.51)	QQQQLGS.QGaFGN.MPP..NAQNLQSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.80|      13|      15|     287|     299|       3
---------------------------------------------------------------------------
  287-  299 (22.96/10.05)	SP.SAATSATSFDN
  303-  316 (20.84/ 8.59)	SPlPYANSPRSSAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.05|      10|     316|       6|      15|       5
---------------------------------------------------------------------------
    6-   15 (18.75/ 6.53)	QDQSQLQNQQ
  324-  333 (19.30/ 6.98)	QQQTQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.61|      21|      21|     414|     434|       9
---------------------------------------------------------------------------
  414-  434 (40.21/17.79)	GMGQNPL...NQGNPLNRHLSQFS
  435-  458 (29.40/11.10)	GTANNALfnaAQGAPNTQMIPNMS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15664 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QHNFSDSSGMYMKSTPPLPSNSINNQGPLLQQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
243
559










Molecular Recognition Features






MoRF SequenceStartStop




NANANA