<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15663

Description Uncharacterized protein
SequenceMEGMMQDQSQLQNQQPPPQIVVPERLNQAVQQQLNLEAVKTRAISLFKAISRILEEFDAHARSNVTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLQGLQSLPISSQIEKLKNRIDMIAAACESAEKVLDDTRKAYQFGTRQGPTILPTLDKSQAAKIQEQENLLRAAVNYGEGLRVTGDQRQITSALPMHLADVLLVGDGGQHNFSDSSGMYMKSTPPLPSNSINNQGPLLQQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
Length563
PositionHead
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.04
Grand average of hydropathy-0.731
Instability index61.17
Isoelectric point9.10
Molecular weight62369.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15663
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.80|      19|      24|     345|     368|       1
---------------------------------------------------------------------------
  342-  360 (38.21/ 9.83)	KMM......QLP..HQQQLLAQQQFRQ
  361-  387 (23.60/ 8.42)	SSMqglgqnQLPqlHDLQGQNQQKFQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.97|      29|      40|     436|     475|       2
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  254-  282 (39.48/ 8.74)	MKSTPPLP.......................SNSINNQGpllQQASGTTLMG
  436-  459 (25.26/ 8.43)	.........................QFsgtANNALFNAA...QGAPNTQMIP
  465-  509 (42.23/19.91)	MSSQPLVPrmqfglsgsnpqrshasQI...LNDQMFNMG...VSNPGS.MMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.35|      14|      51|     421|     435|       3
---------------------------------------------------------------------------
  398-  411 (26.71/ 7.09)	QPLGHQQFQGRQLP
  422-  435 (25.64/ 7.31)	NPLNQGNPLNRHLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.19|      14|     183|     328|     341|       4
---------------------------------------------------------------------------
  328-  341 (29.17/ 8.50)	QQQQQQQQQQQQRQ
  511-  524 (26.03/ 6.76)	QPQQPQQQQQLGSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.25|      23|      38|      50|      73|       5
---------------------------------------------------------------------------
   50-   73 (35.85/36.94)	ISRILEEFDAHARsNVTPKWQDIL
   90-  112 (37.40/32.08)	IRKVSKAFVVHPK.NVNAENATIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.08|      29|      50|     146|     174|       7
---------------------------------------------------------------------------
  146-  174 (47.15/29.72)	SQIEKLKNRIDMIAAACESAE..KVLDDTRK
  193-  223 (42.93/26.51)	SQAAKIQEQENLLRAAVNYGEglRVTGDQRQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15663 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QHNFSDSSGMYMKSTPPLPSNSINNQGPLLQQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
243
563










Molecular Recognition Features






MoRF SequenceStartStop




NANANA