<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15661

Description Uncharacterized protein
SequenceMEGMMQDQSQLQNQQPPPQIVVPERLNQAVQQQLNLEAVKTRAISLFKAISRILEEFDAHARSNVTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLQGLQSLPISSQIEKLKNRIDMIAAACESAEKVLDDTRKAYQFGTRQGPTILPTLDKSQAAKIQEQENLLRAAVNYGEGLRVTGDQRQITSALPMHLADVLLVGDGGQHNFSDSSGMYMKSTPPLPSNSINNQGPLLQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
Length562
PositionHead
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.04
Grand average of hydropathy-0.726
Instability index60.92
Isoelectric point9.10
Molecular weight62241.18
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15661
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.34|      19|      24|     344|     367|       1
---------------------------------------------------------------------------
  341-  359 (37.97/12.40)	KMM......QLP..HQQQLLAQQQFRQ
  360-  386 (23.37/10.60)	SSMqglgqnQLPqlHDLQGQNQQKFQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.58|      30|      40|     435|     474|       2
---------------------------------------------------------------------------
  435-  458 (26.52/11.81)	.......................QFsgtANNALFN...AAQGAPNTQMIP
  466-  508 (45.65/25.96)	SQPLVPRMQfglsgsnpqrshasQI...LNDQMFN...MGVSNPGS.MMP
  509-  531 (35.40/ 8.40)	IQPQQPQQQ..........................qqlGSQGAFG.NMPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.85|      23|     223|     307|     338|       3
---------------------------------------------------------------------------
  315-  337 (43.16/20.88)	NMMNTPSPQQQTQQQQQQQQQQQ
  539-  561 (39.69/ 9.27)	NMVTLQNASQNHSNFVQQRQQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.58|      18|      23|     390|     412|       4
---------------------------------------------------------------------------
  390-  412 (26.71/24.25)	QHQMQfSQPLGhqqfQGRQLP......SG
  415-  438 (30.87/12.87)	QHGMG.QNPLN....QGNPLNrhlsqfSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15661 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNFSDSSGMYMKSTPPLPSNSINNQGPLLQASGTTLMGRSAASPSAATSATSFDNTTTSPLPYANSPRSSANMMNTPSPQQQTQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSSMQGLGQNQLPQLHDLQGQNQQKFQQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGMGQNPLNQGNPLNRHLSQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRMQFGLSGSNPQRSHASQILNDQMFNMGVSNPGSMMPIQPQQPQQQQQLGSQGAFGNMPPNAQNLQSNMVTLQNASQNHSNFVQQRQQNQQ
244
562










Molecular Recognition Features






MoRF SequenceStartStop




NANANA