<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15655

Description Uncharacterized protein
SequenceMMKSGSIDYWRNYFRTANSDIFSIIDHAIIVAASDCPKEFRLRRDRIAERLFSSRWTRCSGCNRVELAVPAHEGENDDGGCKRRDGGCSNDVDDDDEDIDIDGCEFEGGGSKESKVNSSNRDDNDFDNGEVNVNDHLVSNYSYGEAEALTDEIEEESQVVGEVLRIKDILLNSRDESDSVLFESLRRLQLMALTVETLKATEIGKAVNGLRKHGSKEIRHLARTLIDGWKVLVDEWYNATKAFGGSNLQSDEGTPESLNPSIVDEEEEGLPSPPLDEGAFFATQTAGIELSQFFDGMDDFGNPRNSGGSIKNHENGTKPSPENHNITKKKQQTPNDAVVAKDNTSQQMRRQEAVLKTSRPTNADSCPRRPLKQSVDQKANNDLKIMRKTEKVVSQRKPPSVQQDKFKCPDEVAVQMKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGLVQKNQHMRPGSHNRNWAHGRRQ
Length476
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.05
Grand average of hydropathy-0.948
Instability index48.53
Isoelectric point5.56
Molecular weight53657.82
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15655
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.91|      21|      27|     355|     381|       1
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  355-  377 (34.37/34.80)	LKTSRPTNADSCPRRPlkQSVDQ
  383-  403 (36.54/19.18)	LKIMRKTEKVVSQRKP..PSVQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.84|      10|      27|      89|      98|       2
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   89-   98 (18.66/ 9.30)	SNDVDDDDED
  118-  127 (19.18/ 9.76)	SSNRDDNDFD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.65|      22|      27|     232|     253|       3
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  232-  253 (38.78/28.16)	LVDEWYNATKAF......GGSNLQSDEG
  262-  278 (27.78/17.82)	IVDE...EEEGL......PSPPL..DEG
  289-  316 (30.09/19.99)	ELSQFFDGMDDFgnprnsGGSIKNHENG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.04|      11|      20|      77|      87|       4
---------------------------------------------------------------------------
   77-   87 (22.43/11.99)	DDGGCKRRDGG
  100-  110 (21.61/11.31)	DIDGCEFEGGG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.55|      11|     127|      44|      54|       5
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   44-   54 (18.87/13.21)	RDRIAERLFSS
  174-  184 (17.67/11.90)	RDESDSVLFES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.62|      26|      27|     414|     439|       6
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  414-  439 (42.12/28.71)	VQ.MKL.EATKRKLQERYQQAENAKRQR
  441-  468 (37.50/24.79)	IQvMELhDLPKQGLVQKNQHMRPGSHNR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15655 with Med26 domain of Kingdom Viridiplantae
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