<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15652

Description Uncharacterized protein
SequenceMIIKSVDAALQLSHTYRVQVQELGQVLVLFFFSIVVGLIDSTFNDWGLLMKTPDGPSGPFGSADNKDMDVDARGNYNVGRYEHLELLRKTNSLFAIEVLVKLTESRKAMVLLRIVYLNMPEIFNGLLQRLLFYKANKLASSNAESANQLLERLLANIQRVYDSEYQLNRHQIIRMLIDIKPCKHMSYCNSESGQSSRWVSLDIYMENAMDGKQLHIRPSVAILTEAIKTLQVLNRASWQETFLALWLSALRLVQRERDPVEGPIPHLESRLCILLTIVPLAIANILEDEARFSSSSVQGAGKSGGMESTLEHQVEGNGQTSRKHELILSLQVLGDFSGLLCPPSSVIGAANSAALVAASFISNSNNTKSGLVDANRTDPSINAGGNMRHLIVEACITRNLIDASAYYWPGYVSTSVISLVSDLPPVQKSPWLTFMEGAPLDNSLVNLLLTTPAPSLAEIEKLYHIALDGSAEEKSAAAKILCGASLTRGWNIQEHVVCHVVKLLSPPIPSTHNGQRSHLVDYVPMLNAILFGVSTIDNVQMLSLHGVIPEVAASLMPLCEVYGSLVPTSTNISNSSDEPSIYMVFSNAFLFLLRLWKFYRPPLDQWLSGGGAFGGGLTLEYLLLLRNSRIASHNSAASNEINSDSVQFQSTSDKPVYIDFYPKLRAWYCQNKSCVASTLSGLCNGNPVHQVANKILNMIYSKMTKTGTSSGNSSTLSSNSLCGSTSSGGEDPQQRPMLPAWEVLEAIPFVLEAVLTACAHGKLSSRDLTTGLRDLIDFFPASIGAIISYFAAEITRGTWKPVPMNGTDWPSPAAVLPYIEAEMKEILSVAGVDFPSCSSAAGLSPVMLPLPMAALVSLTITFKLNKGLDHIHAVVGPALENCASGCPWPSVPIIGSLWSQKVRRWHDYIVVSCARSVFRQNKEAVAQLLRSCFSSFLGSVNASTSLLTYQSSVCGLLGSTIGVPGVIGSLAPGFLYLRSCQTIQDIQYVNGLITSLVGEHARESTARWPSSKSSRLKSSQASLSLAATKAREAAMLGASLVCVSGGMNLVQELYMETIPTWLLSSRDAKHGGVSVVSRIVEGYAMAYLLIFTGSYAWGVGARSPAWALSRRAHIVGAHMDFLAGVLEGNISLGCHPATWKAYVSCLVHLVVSFTPAWIQEVRVETLKKLASGLRGWHECELALSLLERGGVAAIGSVVELVNVIN
Length1205
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy0.162
Instability index46.60
Isoelectric point6.85
Molecular weight130722.06
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15652
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.00|      24|      44|    1059|    1082|       1
---------------------------------------------------------------------------
 1059- 1082 (42.39/27.01)	PTWLLSSRDAKHGG.VSVVSRIVEG
 1104- 1128 (38.61/23.93)	PAWALSRRAHIVGAhMDFLAGVLEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.30|      31|      44|     823|     857|       2
---------------------------------------------------------------------------
  824-  857 (43.39/29.31)	KEILSVAGVDFPSCSSAAGLSPVmlPLpMAALVS
  869-  899 (57.91/33.30)	DHIHAVVGPALENCASGCPWPSV..PI.IGSLWS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.03|      22|     122|     252|     273|       3
---------------------------------------------------------------------------
  252-  273 (41.64/26.57)	LVQRER.DP...VEGPIPHLESRLCI
  371-  396 (31.39/18.21)	LVDANRtDPsinAGGNMRHLIVEACI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.62|      28|     123|     551|     582|       4
---------------------------------------------------------------------------
  551-  578 (35.05/21.45)	...................VAASLMPLCEvyGSLVPTSTN.ISNSSDE
  656-  697 (20.54/ 8.60)	VYidfypklrawycqnkscVASTLSGLCN..GNPVHQVANkILN....
  699-  735 (27.04/ 9.23)	IY..skmtktgtssgnsstLSSN..SLC...GS...TSSG.GEDPQQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.82|      24|      45|     929|     955|       5
---------------------------------------------------------------------------
  929-  948 (28.81/13.12)	.........................LRSCFSSFLGSVNASTSLLT
  952-  994 (25.66/16.17)	SVCGllgstigvpgvigslapgflyLRSC..QTIQDIQYVNGLIT
  995- 1025 (24.35/ 6.81)	SLVG............eharestarWPSSKSSRLKSSQASLSL..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.85|      18|      44|      76|      93|       6
---------------------------------------------------------------------------
   76-   93 (29.67/23.01)	YNVGRYEHLELLRKTNSL
   94-  111 (25.87/19.00)	FAIEVLVKLTESRKAMVL
  123-  138 (27.31/20.51)	FN.GLLQRL.LFYKANKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15652 with Med33 domain of Kingdom Viridiplantae
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