<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15649

Description Uncharacterized protein
SequenceMELEIRREREMEETILETIKICHHRQEAPLPWAMEVGKCILSLGMSLPSPELGHVLVSYICFHNNHPSLWKFLQQALSSRLLSPIHVLSLLSARVIPNRRSQPEAYRLYLELLGRYAFSLDSIGEEACKQKIIKSVDAALQLSHTYRVQVQELGQVLVLFFFSIVVGLIDSTFNDWGLLMKTPDGPSGPFGSADNKDMDVDARGNYNVGRYEHLELLRKTNSLFAIEVLVKLTESRKAMVLLRIVYLNMPEIFNGLLQRLLFYKANKLASSNAESANQLLERLLANIQRVYDSEYQLNRHQIIRMLIDIKPCKHMSYCNSESGQSSRWVSLDIYMENAMDGKQLHIRPSVAILTEAIKTLQVLNRASWQETFLALWLSALRLVQRERDPVEGPIPHLESRLCILLTIVPLAIANILEDEARFSSSSVQGAGKSGGMESTLEHQVEGNGQTSRKHELILSLQVLGDFSGLLCPPSSVIGAANSAALVAASFISNSNNTKSGLVDANRTDPSINAGGNMRHLIVEACITRNLIDASAYYWPGYVSTSVISLVSDLPPVQKSPWLTFMEGAPLDNSLVNLLLTTPAPSLAEIEKLYHIALDGSAEEKSAAAKILCGASLTRGWNIQEHVVCHVVKLLSPPIPSTHNGQRSHLVDYVPMLNAILFGVSTIDNVQMLSLHGVIPEVAASLMPLCEVYGSLVPTSTNISNSSDEPSIYMVFSNAFLFLLRLWKFYRPPLDQWLSGGGAFGGGLTLEYLLLLRNSRIASHNSAASNEINSDSVQFQSTSDKPVYIDFYPKLRAWYCQNKSCVASTLSGLCNGNPVHQVANKILNMIYSKMTKTGTSSGNSSTLSSNSLCGSTSSGGEDPQQRPMLPAWEVLEAIPFVLEAVLTACAHGKLSSRDLTTGLRDLIDFFPASIGAIISYFAAEITRGTWKPVPMNGTDWPSPAAVLPYIEAEMKEILSVAGVDFPSCSSGLSPVMLPLPMAALVSLTITFKLNKGLDHIHAVVGPALENCASGCPWPSVPIIGSLWSQKVRRWHDYIVVSCARSVFRQNKEAVAQLLRSCFSSFLGSVNASTSLLTYQSSVCGLLGSTIGVPGVIGSLAPGFLYLRSCQTIQDIQYVNGLITSLVGEHARESTARWPSSKSSRLKSSQASLSLAATKAREAAMLGASLVCVSGGMNLVQELYMETIPTWLLSSRDAKHGGVSVVSRIVEGYAMAYLLIFTGSYAWGVGARSPAWALSRRAHIVGAHMDFLAGVLEGNISLGCHPATWKAYVSCLVHLVVSFTPAWIQEVRVETLKKLASGLRGWHECELALSLLERGGVAAIGSVVELVNVIN
Length1333
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy0.129
Instability index49.21
Isoelectric point6.92
Molecular weight145568.21
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15649
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     181.44|      40|      45|     931|     970|       1
---------------------------------------------------------------------------
  858-  894 (59.14/31.17)	GGEDP............QQRPMLPAWEV.LEAIPFVLEAVLTACAHG........KLS
  895-  935 (20.69/ 6.34)	SRDLTtglrdlidffpaSIGAIISYFAAEI.................trgtwkPVPMN
  936-  981 (65.67/35.38)	GTDWP............SPAAVLPYIEAEMKEILSVAGVDFPSCSSGlspvmlPLPMA
  995- 1022 (35.95/16.19)	GLD............................HIHAVVGPALENCASG..cpwpSVPII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.06|      17|     100|      41|      57|       2
---------------------------------------------------------------------------
   41-   57 (30.40/18.74)	LSLGMSLPSPELGHVLV
  142-  158 (29.65/18.09)	LSHTYRVQVQELGQVLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.00|      24|      45|    1187|    1210|       3
---------------------------------------------------------------------------
 1187- 1210 (42.39/29.57)	PTWLLSSRDAKHGG.VSVVSRIVEG
 1232- 1256 (38.61/26.19)	PAWALSRRAHIVGAhMDFLAGVLEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.47|      18|      45|    1057|    1083|       4
---------------------------------------------------------------------------
 1057- 1076 (25.85/11.52)	LRSCfsSFLGSVNASTSLLT
 1105- 1122 (29.62/14.25)	LRSC..QTIQDIQYVNGLIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.25|      20|     161|     234|     254|       6
---------------------------------------------------------------------------
  234-  254 (31.51/29.68)	ESRkAMVLLRIVYLNMPEIFN
  398-  417 (33.74/25.87)	ESR.LCILLTIVPLAIANILE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.37|      19|     135|     688|     706|       8
---------------------------------------------------------------------------
  688-  706 (36.04/19.66)	LCE..............VYGSLVPTSTNISNSS
  812-  844 (25.34/11.82)	LCNgnpvhqvankilnmIYSKMTKTGTSSGNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.47|      14|     104|     510|     525|      10
---------------------------------------------------------------------------
  491-  504 (22.54/ 8.90)	ISNSNNTKSGLVDA
  511-  524 (23.93/12.92)	INAGGNMRHLIVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.68|      20|      98|     549|     586|      13
---------------------------------------------------------------------------
  549-  570 (33.32/39.32)	LvsDLPPVQKSPWLTFMEGAPL
  597-  616 (32.35/ 7.70)	L..DGSAEEKSAAAKILCGASL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15649 with Med33 domain of Kingdom Viridiplantae
Unable to open file!