<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15648

Description Uncharacterized protein
SequenceMIIKSVDAALQLSHTYRVQVQELGQVLVLFFFSIVVGLIDSTFNDWGLLMKTPDGPSGPFGSADNKDMDVDARGNYNVGRYEHLELLRKTNSLFAIEVLVKLTESRKAMVLLRIVYLNMPEIFNGLLQRLLFYKANKLASSNAESANQLLERLLANIQRVYDSEYQLNRHQIIRMLIDIKPCKHMSYCNSESGQSSRWVSLDIYMENAMDGKQLHIRPSVAILTEAIKTLQVLNRASWQETFLALWLSALRLVQRERDPVEGPIPHLESRLCILLTIVPLAIANILEDEARFSSSSVQGAGKSGGMESTLEHQVEGNGQTSRKHELILSLQVLGDFSGLLCPPSSVIGAANSAALVAASFISNSNNTKSGLVDANRTDPSINAGGNMRHLIVEACITRNLIDASAYYWPGYVSTSVISLVSDLPPVQKSPWLTFMEGAPLDNSLVNLLLTTPAPSLAEIEKLYHIALDGSAEEKSAAAKILCGASLTRGWNIQEHVVCHVVKLLSPPIPSTHNGQRSHLVDYVPMLNAILFGVSTIDNVQMLSLHGVIPEVAASLMPLCEVYGSLVPTSTNISNSSDEPSIYMVFSNAFLFLLRLWKFYRPPLDQWLSGGGAFGGGLTLEYLLLLRNSRIASHNSAASNEINSDSVQFQSTSDKPVYIDFYPKLRAWYCQNKSCVASTLSGLCNGNPVHQVANKILNMIYSKMTKTGTSSGNSSTLSSNSLCGSTSSGGEDPQQRPMLPAWEVLEAIPFVLEAVLTACAHGKLSSRDLTTGLRDLIDFFPASIGAIISYFAAEITRGTWKPVPMNGTDWPSPAAVLPYIEAEMKEILSVAGVDFPSCSSGLSPVMLPLPMAALVSLTITFKLNKGLDHIHAVVGPALENCASGCPWPSVPIIGSLWSQKVRRWHDYIVVSCARSVFRQNKEAVAQLLRSCFSSFLGSVNASTSLLTYQSSVCGLLGSTIGVPGVIGSLAPGFLYLRSCQTIQDIQYVNGLITSLVGEHARESTARWPSSKSSRLKSSQASLSLAATKAREAAMLGASLVCVSGGMNLVQELYMETIPTWLLSSRDAKHGGVSVVSRIVEGYAMAYLLIFTGSYAWGVGARSPAWALSRRAHIVGAHMDFLAGVLEGNISLGCHPATWKAYVSCLVHLVVSFTPAWIQEVRVETLKKLASGLRGWHECELALSLLERGGVAAIGSVVELVNVIN
Length1203
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy0.159
Instability index46.66
Isoelectric point6.85
Molecular weight130579.90
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15648
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.08|      28|      76|     929|     956|       1
---------------------------------------------------------------------------
  929-  956 (49.36/28.58)	SC............FSSFLGSVNASTSLLTYQSSVCGLLG
  977- 1009 (21.40/ 8.16)	SCqtiqdiqyvnglITSLVGE.HARESTARWPSS......
 1011- 1035 (32.32/16.13)	...............SSRLKSSQASLSLAATKAREAAMLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.25|      20|     162|     104|     124|       2
---------------------------------------------------------------------------
  104-  124 (31.51/21.32)	ESRkAMVLLRIVYLNMPEIFN
  268-  287 (33.74/18.55)	ESR.LCILLTIVPLAIANILE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.62|      23|      75|     638|     667|       3
---------------------------------------------------------------------------
  569-  596 (32.55/11.02)	STNISNSSDEPsIYMVFSNAflflLRLW
  645-  667 (44.06/20.31)	SVQFQSTSDKP.VYIDFYPK....LRAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.24|      11|      22|     806|     816|       4
---------------------------------------------------------------------------
  806-  816 (22.26/13.31)	GTDWPSPAAVL
  831-  841 (21.98/13.04)	GVDFPSCSSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.02|      47|      49|    1102|    1148|       5
---------------------------------------------------------------------------
 1102- 1148 (84.75/51.57)	PAWALSRRAHIVGAHMDFLAGVLEGNISLGCHPATWKAYVSCLVHLV
 1153- 1199 (78.27/47.07)	PAWIQEVRVETLKKLASGLRGWHECELALSLLERGGVAAIGSVVELV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.56|      18|     122|     744|     761|       6
---------------------------------------------------------------------------
  744-  761 (31.47/19.69)	LEAIPFVLEAVLTACAHG
  866-  883 (33.08/21.07)	LDHIHAVVGPALENCASG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.66|      16|     169|     513|     529|      16
---------------------------------------------------------------------------
  513-  528 (28.79/16.76)	NGQRSHLVDYVPMLNA
  538-  553 (26.88/10.72)	NVQMLSLHGVIPEVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.15|      42|     309|      33|      75|      17
---------------------------------------------------------------------------
   33-   75 (70.34/47.72)	SIVVGLIDS.TFNDWGLLMKTPDGPSGpFGSADNKDMDVDARGN
  344-  386 (63.82/38.05)	SSVIGAANSaALVAASFISNSNNTKSG.LVDANRTDPSINAGGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.48|      14|      21|     152|     165|      20
---------------------------------------------------------------------------
  152-  165 (23.59/15.65)	RLLANIQRVYDSEY
  174-  187 (26.89/18.87)	RMLIDIKPCKHMSY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15648 with Med33 domain of Kingdom Viridiplantae
Unable to open file!