<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15644

Description Uncharacterized protein
SequenceMANNPPYSSIQPLQPPPVGSMDPPRNFVPPMPVQFRPVVPGQQSQQFIPMAAPHFQTVGRSVPVMNAGLPTQPPQPQFPQPVQQLPARPGQPSPGPPPSQVIALPNAQPNRHVAPGSSLPPPSIPTPINYAPGLGGPGAPLSTSYAFAPSSYGQPPVAFNAVTQYQPMAQMHGSNISAGGQPGLSSASQSTAAPVQHNGQQSSAISVNVLTTGIQPTKLTEETTTDWKEHVSATGRRYYYNKRTRQSSWEKPVELMTPIERADASTDWKEFTSPDGRKYYFNKVTRQSKWEIPEELKVAREQVEKASVMETQTETSSNSHTQAAGPPSVEKTPSSSDASAFPAQGAPSSPVPVTPVATVGNLQSESASESSALAVMSSSVTSNLDGIQTAENPVSAVPGSSEATATGTGVDATTAQINNSSNFSGQDNSGSANKAPTQDKEEAAKDVVTREKVNNVLLEEKAVSQEPLTYADKLEAKNAFKALLESANVGSDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLGQKRKQEAEERRIKQKKAREDFRNMLEESKELSLTTRWSKAVTMFENDERFKAVERERDRRDLFDAFLQELEVKERAKIQEERKRNVMEYRQFLESCDFIKVSTQWRKVQDRLEADERCSRLDKIDRLEIFQDYLRDLEKEEEEQRKIQKEELRKTERKNRDEFRKLLEEHVAAGSLTAKTHWRDYYLKVKDLPAYLAVASNTSGSTPKDLFEDVAEELEKQYHEDKTQIKNVVKLKKVSLASTWTLEDFKAAIVEDVSPPPVSDVNLKIVFDELLERAKEKEEKEAKKRKRLADEFLNLLHSIKEITASSKWENSKELFESSREFSSINEESICMEIFEEYIDQLKDQAKENERKRKEEKAKKEKEREERDRRKSKHRSDKERGHEREKEHTKKEEADTEIDVTEDHFSNDNKRSGNDNNKKQRKRHNDSADNLNENEKDRSKSSHRHSSEHKKSRRHNSTPDSDGESRHKRHKRDHRNGSRRNGDNLDLEDGEFGDDGETR
Length1028
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.06
Grand average of hydropathy-1.071
Instability index58.40
Isoelectric point6.35
Molecular weight116181.35
Publications









Function






Annotated function


GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15644
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.76|      21|      21|      79|      99|       1
---------------------------------------------------------------------------
   30-   55 (28.49/ 9.76)	PMPVQFRPVVPGQQSqqfiPmAAPHF
   79-   99 (47.08/20.39)	PQPVQQLPARPGQPS....P.GPPPS
  125-  142 (31.19/11.31)	PTPINY...APGLGG....P.GAPLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     491.05|      65|      65|     532|     596|       2
---------------------------------------------------------------------------
  459-  523 (54.33/31.13)	...............EEK.A.VSQ.......EpltyadklEAKN..A...FKALL.ES.ANVGSD..WTWDQAMRV....IINDKRYGA..LK.......TLGE...RK....QAFNE
  524-  591 (94.55/60.33)	YLgqkRKQ.....EAEER.R.IKQ.......K........KARE..D...FRNMLEES.KELSLT..TRWSKAVTM....FENDERFKA..VE.......RERD...RR....DLFDA
  592-  658 (76.62/47.32)	FL...QEL.....EVKERaK.IQE.......E........RKRNvmE...YRQFLESC.DFIKVS..TQWRKVQDR....LEADERCSR..LD.......K.ID...RL....EIFQD
  659-  739 (60.28/35.45)	YL...RDL..ekeEEEQR.K.IQKeelrkteR........KNRD..E...FRKLLEEHvAAGSLTakTHWRDYYLK....VKDLPAYLA..VA.......SNTSgstPK....DLFED
  740-  799 (33.13/15.74)	VA...EEL......................eK........QYHE..DktqIKNVV.KL.KKVSLA..STW....TL......ED..FKAaiVEdvspppvSDVN...LK....IVFDE
  800-  866 (69.81/42.37)	LL...ERA..kekEEKEA.K..KR.......K........RLAD..E...FLNLLHSI.KEITAS..SKWENSKEL....FESSREFSS..IN.......EESI...CM....EIFEE
  892-  959 (51.66/29.20)	.............EREER.D.RRK.......S........KHRS..D...KERGHERE.KEHTKK..EEADTEIDVtedhFSNDNKRSG..ND.......NNKK...QRkrhnDSADN
  960- 1019 (50.66/28.47)	.L...NENekdrsKSSHR.HsSEH.......K........KSRR.......HNSTPDS.DGESRH..KRHKR...........DHR.NG..SR.......RNGD...NL....DLEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.31|      40|      40|     222|     261|       3
---------------------------------------------------------------------------
  222-  261 (78.85/51.20)	ETTTDWKEHVSATGRRYYYNKRTRQSSWEKPVELMTPIER
  263-  302 (76.46/49.42)	DASTDWKEFTSPDGRKYYFNKVTRQSKWEIPEELKVAREQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.85|      18|      19|     316|     333|       4
---------------------------------------------------------------------------
  316-  328 (17.56/ 7.01)	........SSNSHTQAAGPPS
  329-  348 (26.01/14.53)	VEKTP.ssSDASAFPAQGAPS
  351-  371 (22.28/11.21)	VPVTPvatVGNLQSESASESS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15644 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EIPEELKVAREQVEKASVMETQTETSSNSHTQAAGPPSVEKTPSSSDASAFPAQGAPSSPVPVTPVATVGNLQSESASESSALAVMSSSVTSNLDGIQTAENPVSAVPGSSEATATGTGVDATTAQINNSSNFSGQDNSGSANKAPTQDKEEAAKDVVTRE
2) LKDQAKENERKRKEEKAKKEKEREERDRRKSKHRSDKERGHEREKEHTKKEEADTEIDVTEDHFSNDNKRSGNDNNKKQRKRHNDSADNLNENEKDRSKSSHRHSSEHKKSRRHNSTPDSDGESRHKRHKRDHRNGSRRNGDNLDLEDGEFGDDGETR
3) MANNPPYSSIQPLQPPPVGSMDPPRNFVPPMPVQFRPVVPGQQSQQFIPMAAPHFQ
4) PVAFNAVTQYQPMAQMHGSNISAGGQPGLSSASQSTAAPVQHNGQQSSAISVNVLTTGIQPTKLTEETTTDWK
5) VGRSVPVMNAGLPTQPPQPQFPQPVQQLPARPGQPSPGPPPSQVIALPNAQPNRHVAPGSSLPPPSIPTPINYAPGLGG
291
871
1
156
58
451
1028
56
228
136










Molecular Recognition Features






MoRF SequenceStartStop




NANANA