<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15642

Description Uncharacterized protein
SequenceMMKSLEYWRNYFRTANCDIFRVIDNAIIVAASDCPKEFRLRRDRIAERLFCYRLTRCSACNRVELAVPAHEGENDDDGACKRRDGDCGNGVDDDDDEDIDIDGCEFHGGALKESKVNSRNRDGNDSDNGEVNVNDHLMSNYSYGEAEALTDEIEEESQVVGEVLRIKEILLNSRDETDSVLFESLRRLQLMVLTVDTLKATEIGKAVNGLRKHASKQIHHLARSLIDGWKVLVDEWYSATKAFGGDEGTSESVNPSVVDEEEGLPSPPLDEGAFFATQTTGIELSEFFDGMDDFGNPRNSGEFIKNRENGRKQSLENQNITKGKQQIPNEAIVVAKDNKSKQIRKKEAVLKPSGLLSADLGPARPPKQSVERKANSDTKVMRKTEQVVSQRKPPSGQQDKFKCSDEVAVRMKLEATKRKLQECYQQAENAKRQRTIQVMELHDLPKQGLAKKNPYMRPGSRNRHWAHAHGRRQLS
Length475
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.05
Grand average of hydropathy-0.843
Instability index43.98
Isoelectric point5.94
Molecular weight53583.31
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15642
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.40|      27|      27|     364|     390|       1
---------------------------------------------------------------------------
  328-  352 (31.83/17.48)	..PNEAIVVAKDNKSKQIR.KKEAVLKP
  364-  390 (42.76/25.68)	RPPKQSVERKANSDTKVMR.KTEQVVSQ
  392-  414 (25.80/12.95)	KPPSGQQDKFKCSDEVAVRmKLE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.25|      14|      29|     268|     281|       2
---------------------------------------------------------------------------
  268-  281 (24.85/18.29)	PLDEGAFFATQTTG
  297-  310 (25.40/18.86)	PRNSGEFIKNRENG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.41|      11|      29|      92|     102|       3
---------------------------------------------------------------------------
   74-   84 (19.82/ 8.07)	NDDDGACKRRD
   92-  102 (18.22/ 6.96)	DDDDDEDIDID
  124-  134 (17.37/ 6.38)	NDSDNGEVNVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15642 with Med26 domain of Kingdom Viridiplantae
Unable to open file!