<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15641

Description Uncharacterized protein
SequenceMETQTETSSNSHTQAAGPPSVEKTPSSSDASAFPAQGAPSSPVPVTPVATVGNLQSESASESSALAVMSSSVTSNLDGIQTAENPVSAVPGSSEATATGTGVDATTAQINNSSNFSGQDNSGSANKAPTQDKEEAAKDVVTREKVNNVLLEEKAVSQEPLTYADKLEAKNAFKALLESANVGSDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLGQKRKQEAEERRIKQKKAREDFRNMLEESKELSLTTRWSKAVTMFENDERFKAVERERDRRDLFDAFLQELEVKERAKIQEERKRNVMEYRQFLESCDFIKVSTQWRKVQDRLEADERCSRLDKIDRLEIFQDYLRDLEKEEEEQRKIQKEELRKTERKNRDEFRKLLEEHVAAGSLTAKTHWRDYYLKVKDLPAYLAVASNTSGSTPKDLFEDVAEELEKQYHEDKTQIKNVVKLKKVSLASTWTLEDFKAAIVEDVSPPPVSDVNLKIVFDELLERAKEKEEKEAKKRKRLADEFLNLLHSIKEITASSKWENSKELFESSREFSSINEESICMEIFEEYIDQLKDQAKENERKRKEEKAKKEKEREERDRRKSKHRSDKERGHEREKEHTKKEEADTEIDVTEDHFSNDNKRSGNDNNKKQRKRHNDSADNLNENEKDRSKSSHRHSSEHKKSRRHNSTPDSDGESRHKRHKRDHRNGSRRNGDNLDLEDGEFGDDGETR
Length720
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.05
Grand average of hydropathy-1.254
Instability index50.27
Isoelectric point5.86
Molecular weight82906.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15641
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     507.60|      66|      66|     223|     288|       1
---------------------------------------------------------------------------
  151-  215 (55.16/25.79)	............EEK.A.VSQ.......EpltyadklEAKN..A.FKALL.ES.ANV....GSD..WTWDQAMRVIINDKRYGA..LK.......TLGE...RK....QAFNE
  216-  283 (96.58/50.82)	YLGQK..rkQEAEER.R.IKQ.......K........KARE..D.FRNMLEES.KEL....SLT..TRWSKAVTMFENDERFKA..VE.......RERD...RR....DLFDA
  284-  350 (75.47/38.07)	FLQEL.....EVKERaK.IQE.......E........RKRNvmE.YRQFLESC.DFI....KVS..TQWRKVQDRLEADERCSR..LD.......K.ID...RL....EIFQD
  351-  431 (60.49/29.01)	YLRDL..ekEEEEQR.K.IQKeelrkteR........KNRD..E.FRKLLEEHvAAG....SLTakTHWRDYYLKVKDLPAYLA..VA.......SNTSgstPK....DLFED
  432-  491 (39.99/16.62)	VAEEL..ekQYHED.........................KT..Q.IKNVV.KL.KKV....SLA..STW....TL..ED..FKAaiVEdvspppvSDVN...LK....IVFDE
  492-  558 (72.72/36.40)	LLERA....KEKEEK.E.AKK.......R........KRLA..DeFLNLLHSI.KEI....TAS..SKWENSKELFESSREFSS..IN.......EESI...CM....EIFEE
  583-  651 (56.64/26.69)	.........KEREER.D.RRK.......S........KHRS..D.KERGHERE.KEHtkkeEAD..TEIDVTEDHFSNDNKRSG..ND.......NNKK...QRkrhnDSADN
  652-  711 (50.54/23.00)	.LNENekdrSKSSHR.HsSEH.......K........KSRR.....HNSTPDS.DGE....SRH..KRHKR.......DHR.NG..SR.......RNGD...NL....DLEDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.18|      33|      36|      47|      80|       2
---------------------------------------------------------------------------
    4-   29 (34.10/21.70)	.........QTETSSNSHTQAAGPPSV..EKTPSSSD
   47-   80 (47.02/38.52)	PVATV.GNlQSESASESSALAVMSSSV..TSNLDGIQ
   85-  117 (32.07/20.28)	PVSAVpGS..SEATATGTGVDATTAQInnSSNFSG..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15641 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKDQAKENERKRKEEKAKKEKEREERDRRKSKHRSDKERGHEREKEHTKKEEADTEIDVTEDHFSNDNKRSGNDNNKKQRKRHNDSADNLNENEKDRSKSSHRHSSEHKKSRRHNSTPDSDGESRHKRHKRDHRNGSRRNGDNLDLEDGEFGDDGETR
2) METQTETSSNSHTQAAGPPSVEKTPSSSDASAFPAQGAPSSPVPVTPVATVGNLQSESASESSALAVMSSSVTSNLDGIQTAENPVSAVPGSSEATATGTGVDATTAQINNSSNFSGQDNSGSANKAPTQDKEEAAKDVVTRE
563
1
720
143










Molecular Recognition Features






MoRF SequenceStartStop




NANANA