<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15639

Description Uncharacterized protein
SequenceMELLNPAHPPLHDPSRESLSGFSSPGVFRVGFNRTVNSQLPDIVEGGGCVSGSSGENVYVAVGKSVEKTVGLLHWSFKRFGGRDICILHVHQPSPLIPTLLGKLPASQANAEVVSAHRRHEREQSKKLLEIYLAICRRAKVKASIVTTDCDQVQKGIVELVNRHGVRMLVMGAVPKICMKVKKSSNKASYVAKNSPLFSEIWFIKKGKHVWTREASERSSLLPSCGNAGGASSEIVRSLSLRLSKNASPFRPEYVRSTSAKDLTCARISHWVQSESTCAEVPMLRARSGSTNTCFIHSIQSSCSPRSSSCSGTSTERRVSSDSESKVEEDSLCCKMEEVRIEAKSSRHEAFEELLKRKKLEFQTLEAMSKLKIFDSAYTNEVKQRKGAENALRNTIEEQEKLLEEKGEITKELQRTMRNVALLDSRVQEANRRRDEAAGELKLIQTSIASLWQEKQRIRRQKMEAAHWLERWKNHRQAGAPNCNGLLGFVEELPELAEFTLSDLQTATCNFSESFKLGQGGYGYVYKGEMLGRTVAIKKLHPNNMQGQSSFQKEVQVLGKLQHPHLVTLLGACPEAWSLVYEYLPNGSLHDCLFRKNNISPLTWKVRARIIAEISSALCFLHSSKPEKIVHGDLKPENILLDYELGCKICEFGICRLVTDDTFYCPSFRRGTEPKGTFPYTDPEFQRVGILTTKSDIYSFGVITLQLLTGRPPIGLVGDVRRAMSCGKLSTILDPSAGEWPTLVAKRLVDLGLQFCELSSRERPELTPALVRELELLHVSEERPVPSFFLCPILREIMHDPQVAADGFTYEGEAIRGWLENGRETSPMTNLKLSHLHLTPNHAVRLAIQDWLCNS
Length855
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-0.349
Instability index51.28
Isoelectric point8.84
Molecular weight95651.65
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15639
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.68|      43|     126|      50|      98|       1
---------------------------------------------------------------------------
   50-   98 (65.64/51.34)	VSGSSGENVYVAVGKSVEKTVgllhWSFKRfgGRDICILHVHQPSPLIP
  181-  223 (74.05/41.97)	VKKSSNKASYVAKNSPLFSEI....WFIKK..GKHVWTREASERSSLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.53|      14|      22|     227|     240|       3
---------------------------------------------------------------------------
  227-  240 (23.78/13.03)	NAGGASSEIVRSLS
  246-  259 (26.75/15.48)	NASPFRPEYVRSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.52|      21|      22|     323|     343|       4
---------------------------------------------------------------------------
  323-  343 (35.33/22.49)	SESKVEEDSLC.CKMEEVRIEA
  346-  367 (29.19/17.34)	SRHEAFEELLKrKKLEFQTLEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.62|      16|     509|     261|     285|       5
---------------------------------------------------------------------------
  261-  282 (18.64/30.20)	KDLTCarISHWVQseSTCAevP
  290-  305 (31.98/13.61)	STNTC..FIHSIQ..SSCS..P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15639 with Med32 domain of Kingdom Viridiplantae
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